Evidence map›Paper›PMID 23690926›Full record

ArticlePloS one2013

Ultra-rare mutation in long-range enhancer predisposes to thyroid carcinoma with high penetrance.

Huiling He, Wei Li, Dayong Wu, Rebecca Nagy, Sandya Liyanarachchi, Keiko Akagi, Jaroslaw Jendrzejewski, Hong Jiao, Kevin Hoag, Bernard Wen and 17 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 27 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed, 1 pooled it
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 1 synthesis or guideline pooled it, 42 citations in OpenAlex.

  1. Guideline
  2. Thyroid : official journal of the American Thyroid Association · 2024
    Article
  3. Article
  4. Review
  5. Article
  6. Comprehensive Pan-Cancer Mutation Density Patterns in Enhancer RNA.International journal of molecular sciences · 2023
    Article
  7. Genetic susceptibility to hereditary non-medullary thyroid cancer.Hereditary cancer in clinical practice · 2022
    Review
  8. Article
  9. Review
  10. Review
  11. Review
  12. Review
  13. Assessing thyroid cancer risk using polygenic risk scores.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  14. A Truncating Germline Mutation ofThyroid : official journal of the American Thyroid Association · 2020
    Article
  15. Article
  16. Article
  17. Article
  18. The Role of NRG1 in the Predisposition to Papillary Thyroid Carcinoma.The Journal of clinical endocrinology and metabolism · 2018
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

27 authors at 6 institutions in 4 countries.

Huiling HeDepartment of Molecular Virology, Immunology and Medical Genetics, Ohio State University, Wexner Medical Center and Comprehensive Cancer Center, the Ohio State University, Columbus, Ohio, USA. huiling.he@osumc.edu
Wei Li
Dayong Wu
Rebecca Nagy
Sandya Liyanarachchi
Keiko Akagi
Jaroslaw Jendrzejewski
Hong Jiao
Kevin Hoag
Bernard Wen
Mukund Srinivas
Gavisha Waidyaratne
Rui Wang
Anna Wojcicka
Ilene R Lattimer
Elzbieta Stachlewska
Malgorzata Czetwertynska
Joanna Dlugosinska
Wojciech Gierlikowski
Rafal Ploski
Marek Krawczyk
Krystian Jazdzewski
Juha Kere
David E Symer
Victor Jin
Qianben Wang
Albert de la Chapelle
The Ohio State University Wexner Medical Center · USCancer Genetics (United States) · USMedical University of Warsaw · PLThe Maria Sklodowska-Curie National Research Institute of Oncology · PLKarolinska Institutet · SEScience for Life Laboratory · SE

Funding

Translational Therapeutics Research Program (TT)P30CA016058 · NCI · OHIO STATE UNIVERSITY · PI Tasleem J Padamsee · 1985 to 2026
$132.3M
Selective Modulation of Thyroidal RadioiodineP01CA124570 · NCI · OHIO STATE UNIVERSITY · PI RINGEL, MATTHEW D · 2008 to 2017
$23.4M
Regulation of androgen receptor function by H3K4 methylation in prostate cancerR01CA151979 · NCI · OHIO STATE UNIVERSITY · PI WANG, QIANBEN · 2011 to 2015
$1.6M
NCI NIH HHS CA151979NCI NIH HHS P01 CA124570NCI NIH HHS P01CA124570NCI NIH HHS P30 CA016058NCI NIH HHS P30CA16058NCI NIH HHS R01 CA151979
6 · The paper itself

Abstract

Thyroid cancer shows high heritability but causative genes remain largely unknown. According to a common hypothesis the genetic predisposition to thyroid cancer is highly heterogeneous; being in part due to many different rare alleles. Here we used linkage analysis and targeted deep sequencing to detect a novel single-nucleotide mutation in chromosome 4q32 (4q32A>C) in a large pedigree displaying non-medullary thyroid carcinoma (NMTC). This mutation is generally ultra-rare; it was not found in 38 NMTC families, in 2676 sporadic NMTC cases or 2470 controls. The mutation is located in a long-range enhancer element whose ability to bind the transcription factors POU2F and YY1 is significantly impaired, with decreased activity in the presence of the C- allele compared with the wild type A-allele. An enhancer RNA (eRNA) is transcribed in thyroid tissue from this region and is greatly downregulated in NMTC tumors. We suggest that this is an example of an ultra-rare mutation predisposing to thyroid cancer with high penetrance.

Indexed as

MutationPenetranceCase-Control StudiesChromosomes, Human, Pair 4Databases, GeneticDNA Mutational AnalysisEnhancer Elements, GeneticGenetic LinkageGenetic LociGenetic Predisposition to DiseaseGenomicsHumansThyroid NeoplasmsTranscription, Genetic

Identifiers

PMID23690926
PMCPMC3653903
OpenAlexW2074974820

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.