Evidence map›Paper›PMID 23689819›Full record

ArticlePlant molecular biology2013

TAL effector nucleases induce mutations at a pre-selected location in the genome of primary barley transformants.

Toni Wendt, Preben Bach Holm, Colby G Starker, Michelle Christian, Daniel F Voytas, Henrik Brinch-Pedersen, Inger Bæksted Holme

Open access · greenAbstract read
In one paragraph

Article in Plant molecular biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
13.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 191 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Review
  5. Review
  6. Review
  7. Genome Editing and Designer Crops for the Future.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  8. Review
  9. Review
  10. Review
  11. Review
  12. A CRISPR/Cas9-Based Mutagenesis Protocol forFrontiers in plant science · 2020
    Article
  13. Review
  14. Review
  15. Review
  16. Article
  17. Article
  18. Article
  19. Naming CRISPR alleles: endonuclease-mediated mutation nomenclature across species.Mammalian genome : official journal of the International Mammalian Genome Society · 2017
    Review
  20. High-efficiency gene targeting in hexaploid wheat using DNA replicons and CRISPR/Cas9.The Plant journal : for cell and molecular biology · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Toni WendtResearch Centre Flakkebjerg, Department of Molecular Biology and Genetics, Aarhus University, Slagelse, Denmark, toni.wendt@agrsci.dk.
Preben Bach Holm
Colby G Starker
Michelle Christian
Daniel F Voytas
Henrik Brinch-Pedersen
Inger Bæksted Holme
Aarhus University · DKUniversity of Minnesota · US

Funding

DNA targeting by TAL effectorsR01GM098861 · NIGMS · IOWA STATE UNIVERSITY · PI BOGDANOVE, ADAM J, STODDARD, BARRY L. · 2011 to 2014
$2.0M
NIGMS NIH HHS R01 GM098861
6 · The paper itself

Abstract

Transcription activator-like effector nucleases (TALENs) enable targeted mutagenesis in a variety of organisms. The primary advantage of TALENs over other sequence-specific nucleases, namely zinc finger nucleases and meganucleases, lies in their ease of assembly, reliability of function, and their broad targeting range. Here we report the assembly of several TALENs for a specific genomic locus in barley. The cleavage activity of individual TALENs was first tested in vivo using a yeast-based, single-strand annealing assay. The most efficient TALEN was then selected for barley transformation. Analysis of the resulting transformants showed that TALEN-induced double strand breaks led to the introduction of short deletions at the target site. Additional analysis revealed that each barley transformant contained a range of different mutations, indicating that mutations occurred independently in different cells.

Indexed as

Genome, PlantMutationTransformation, GeneticBase SequenceEndonucleasesHordeumMolecular Sequence DataSequence Homology, Nucleic AcidTranscription FactorsEndonucleasesTranscription Factors

Identifiers

PMID23689819
PMCPMC7880306
OpenAlexW2095307330

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.