Evidence map›Paper›PMID 23689818›Full record

ArticlePlant molecular biology2013

Identification of key amino acids for the evolution of promoter target specificity of anthocyanin and proanthocyanidin regulating MYB factors.

Simon C Heppel, Felix W Jaffé, Adam M Takos, Swen Schellmann, Thomas Rausch, Amanda R Walker, Jochen Bogs

Abstract read
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In one paragraph

Article in Plant molecular biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 60 papers.

0numbers the graph read from it
0cells of the map it votes in
60citing papers in PubMed
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

60 citing papers in PubMed, 119 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Identification of a candidate gene for the I locus determining the dominant white bulb color in onion (Allium cepa L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024
    Article
  8. Article
  9. Article
  10. International journal of molecular sciences · 2023
    Article
  11. MYB Transcription FactorInternational journal of molecular sciences · 2023
    Article
  12. Article
  13. Article
  14. Article
  15. EutremaFrontiers in plant science · 2022
    Article
  16. An LTR retrotransposon in the promoter of aHorticulture research · 2022
    Article
  17. Article
  18. Article
  19. Light Induced Regulation Pathway of Anthocyanin Biosynthesis in Plants.International journal of molecular sciences · 2021
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 4 countries.

Simon C HeppelCentre for Organismal Studies Heidelberg, Heidelberg, Germany. simon.heppel@cos.uni-heidelberg.de
Felix W Jaffé
Adam M Takos
Swen Schellmann
Thomas Rausch
Amanda R Walker
Jochen Bogs
Commonwealth Scientific and Industrial Research Organisation · AUHeidelberg University · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A complex of R2R3-MYB and bHLH transcription factors, stabilized by WD40 repeat proteins, regulates gene transcription for plant cell pigmentation and epidermal cell morphology. It is the MYB component of this complex which specifies promoter target activation. The Arabidopsis MYB TT2 regulates proanthocyanidin (PA) biosynthesis by activating the expression of ANR (anthocyanidin reductase), the gene product of which catalyzes the first committed step of this pathway. Conversely the closely related MYB PAP4 (AtMYB114) regulates the anthocyanin pathway and specifically activates UFGT (UDP-glucose:flavonoid-3-O-glucosyltransferase), encoding the first enzyme of the anthocyanin pathway. Both at the level of structural and regulatory genes, evolution of PA biosynthesis proceeded anthocyanin biosynthesis and we have identified key residues in these MYB transcription factors for the evolution of target promoter specificity. Using chimeric and point mutated variants of TT2 and PAP4 we found that exchange of a single amino acid, Gly/Arg(39) in the R2 domain combined with an exchange of a four amino acid motif in the R3 domain, could swap the pathway selection of TT2 and PAP4, thereby converting in planta specificity of the PA towards the anthocyanin pathway and vice versa. The general importance of these amino acids for target specificity was also shown for the grapevine transcription factors VvMYBPA2 and VvMYBA2 which regulate PAs and anthocyanins, respectively. These results provide an insight into the evolution of the different flavonoid regulators from a common ancestral gene.

Indexed as

Amino Acid SequenceAnthocyaninsArabidopsisArabidopsis ProteinsEvolution, MolecularGene Expression Regulation, PlantMolecular Sequence DataProanthocyanidinsSequence Homology, Amino AcidTranscription FactorsAnthocyaninsArabidopsis ProteinsMyb protein, ArabidopsisproanthocyanidinProanthocyanidinsTranscription Factors

Identifiers

PMID23689818
OpenAlexW2029274905

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.