ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2013
Transcriptome sequencing to produce SNP-based genetic maps of onion.
Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
34 citing papers in PubMed.
- RNA-Seq analysis reveals potential salt- and drought stress tolerance-associated genes in advanced long-day onion breeding lines.Protoplasma · 2026Article
- Harnessing chloroplast SSRs to decipher genetic diversity in underutilizedFrontiers in plant science · 2025Article
- Identification, cloning and characterization of AcMSH1 from Onion (Allium cepa L.).Molecular biology reports · 2023Article
- Construction of a high-resolution genetic map and identification of single nucleotide polymorphism markers relevant to flower stalk height in onion.Frontiers in plant science · 2023Article
- Integrating Genetic and Chromosome Maps ofInternational journal of molecular sciences · 2022Article
- Development of a genome-wide marker design workflow for onions and its application in target amplicon sequencing-based genotyping.DNA research : an international journal for rapid publication of reports on genes and genomes · 2022Article
- Article
- Genetic diversity and population structure in onion (Physiology and molecular biology of plants : an international journal of functional plant biology · 2021Article
- Genotyping-by-Sequencing Derived Genetic Linkage Map and Quantitative Trait Loci for Sugar Content in Onion (Plants (Basel, Switzerland) · 2021Article
- Insights from the first genome assembly of Onion (Allium cepa).G3 (Bethesda, Md.) · 2021Article
- Article
- Simulation-based optimization of genomic selection scheme for accelerating genetic gain while preventing inbreeding depression in onion breeding.Breeding science · 2020Article
- Insights into phylogeny, age and evolution of Allium (Amaryllidaceae) based on the whole plastome sequences.Annals of botany · 2020Article
- Construction of an Onion (Plants (Basel, Switzerland) · 2020Article
- Transposition of a non-autonomous DNA transposon in the gene coding for a bHLH transcription factor results in a white bulb color of onions (Allium cepa L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020Article
- Omics approaches inPeerJ · 2020Article
- Assembly and characterisation of a unique onion diversity set identifies resistance to Fusarium basal rot and improved seedling vigour.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2019Article
- Comparative Tyramide-FISH mapping of the genes controlling flavor and bulb color in Allium species revealed an altered gene order.Scientific reports · 2019Article
- The Power of GenomicPlants (Basel, Switzerland) · 2019Article
- SNP discovery of Korean short day onion inbred lines using double digest restriction site-associated DNA sequencing.PloS one · 2018Article
Corrections and comments
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Authors and funding
5 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
We used the Roche-454 platform to sequence from normalized cDNA libraries from each of two inbred lines of onion (OH1 and 5225). From approximately 1.6 million reads from each inbred, 27,065 and 33,254 cDNA contigs were assembled from OH1 and 5225, respectively. In total, 3,364 well supported single nucleotide polymorphisms (SNPs) on 1,716 cDNA contigs were identified between these two inbreds. One SNP on each of 1,256 contigs was randomly selected for genotyping. OH1 and 5225 were crossed and 182 gynogenic haploids extracted from hybrid plants were used for SNP mapping. A total of 597 SNPs segregated in the OH1 × 5225 haploid family and a genetic map of ten linkage groups (LOD ≥8) was constructed. Three hundred and thirty-nine of the newly identified SNPs were also mapped using a previously developed segregating family from BYG15-23 × AC43, and 223 common SNPs were used to join the two maps. Because these new SNPs are in expressed regions of the genome and commonly occur among onion germplasms, they will be useful for genetic mapping, gene tagging, marker-aided selection, quality control of seed lots, and fingerprinting of cultivars.
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