Evidence map›Paper›PMID 23688818›Full record

ArticleJournal of molecular biology2013

Functional domains of the HK97 capsid maturation protease and the mechanisms of protein encapsidation.

Robert L Duda, Bonnie Oh, Roger W Hendrix

Abstract read
In one paragraph

Article in Journal of molecular biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
2.6field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 38 citations in OpenAlex.

  1. Novel LyticViruses · 2026
    Article
  2. Viruses · 2026
    Article
  3. Article
  4. Review
  5. Article
  6. Viruses · 2024
    Article
  7. AeLife · 2024
    Article
  8. AbioRxiv : the preprint server for biology · 2023
    Article
  9. Article
  10. Article
  11. Article
  12. International journal of molecular sciences · 2021
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Nanoreactor Design Based on Self-Assembling Protein Nanocages.International journal of molecular sciences · 2019
    Review
  18. Article
  19. Roger Hendrix: Gentle Provocateur.Journal of bacteriology · 2018
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Robert L DudaDepartment of Biological Sciences, University of Pittsburgh, Room 318 Langley Hall, 4249 Fifth Avenue, Pittsburgh, PA 15260, USA. duda@pitt.edu
Bonnie Oh
Roger W Hendrix
University of Pittsburgh · US

Funding

ASSEMBLY AND STRUCTURE OF BACTERIOPHAGE LAMBDAR01GM047795 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI DUDA, ROBERT LOUIS · 1991 to 2017
$7.8M
NIGMS NIH HHS R01 GM047795NIGMS NIH HHS R01GM047795
6 · The paper itself

Abstract

Tailed double-stranded DNA bacteriophages and herpesviruses build capsids by co-assembling a major capsid protein with an internal scaffolding protein that then exits from the assembled structure either intact or after digestion in situ by a protease. In bacteriophage HK97, the 102-residue N-terminal delta domain of the major capsid protein is also removed by proteolysis after assembly and appears to perform the scaffolding function. We describe the HK97 protease that carries out these maturation cleavages. Insertion mutations at seven sites in the protease gene produced mutant proteins that assemble into proheads, and those in the N-terminal two-thirds were enzymatically inactive. Plasmid-expressed protease was rapidly cleaved in vivo but was stabilized by co-expression with the delta domain. Purified protease was found to be active during the assembly of proheads in vitro. Heterologous fusions to the intact protease or to C-terminal fragments targeted fusion proteins into proheads. We confirm that the catalytic activity resides in the N-terminal two-thirds of the protease polypeptide and suggest that the C-terminal one-fifth of the protein contains a capsid targeting signal. The implications of this arrangement are compared to capsid targeting systems in other phages, herpesviruses, and encapsulins.

Indexed as

Virus AssemblyBacteriophagesCapsid ProteinsCatalytic DomainDNA Mutational AnalysisMutagenesis, InsertionalPeptide HydrolasesProtein Processing, Post-TranslationalProtein Sorting SignalsProtein Structure, TertiaryProteolysisCapsid ProteinsPeptide HydrolasesProtein Sorting Signalscapsid maturationEDTAethylenediaminetetraacetic acidguanidine hydrochlorideGuHClMALDI-TOFmatrix-assisted laser desorption/ionization time of flightN-α-tosyl-l-lysyl-chloromethyl-ketoneprotein processsingprotein targetingTCATLCKtrichloroacetic acidvirus assembly

Identifiers

PMID23688818
PMCPMC3709472
OpenAlexW1971707539

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.