Evidence map›Paper›PMID 23688394›Full record

ArticleBiochimica et biophysica acta2013

Analysis of SARS-CoV E protein ion channel activity by tuning the protein and lipid charge.

Carmina Verdiá-Báguena, Jose L Nieto-Torres, Antonio Alcaraz, Marta L Dediego, Luis Enjuanes, Vicente M Aguilella

Open access · bronzeAbstract read
In one paragraph

Article in Biochimica et biophysica acta, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 64 papers.

0numbers the graph read from it
0cells of the map it votes in
64citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

64 citing papers in PubMed, 108 citations in OpenAlex.

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  10. Role of Divalent Cations in Infections in Host-Pathogen Interaction.International journal of molecular sciences · 2024
    Review
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  12. Article
  13. Transmembrane conformation of the envelope protein of an alpha coronavirus, NL63.Protein science : a publication of the Protein Society · 2024
    Article
  14. Article
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4 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Carmina Verdiá-BáguenaDepartment of Physics, Laboratory of Molecular Biophysics, Universitat Jaume I, 12071 Castellón, Spain.
Jose L Nieto-Torres
Antonio Alcaraz
Marta L Dediego
Luis Enjuanes
Vicente M Aguilella
Centro Nacional de Biotecnología · ESUniversitat Jaume I · ES

Funding

SARS-CoV Proteins in Heterologous Viral InfectionP01AI060699 · NIAID · UNIVERSITY OF IOWA · PI PERLMAN, STANLEY · 2004 to 2021
$21.5M
NIAID NIH HHS 2P01AI060699-06A1NIAID NIH HHS P01 AI060699PHS HHS W000306844
6 · The paper itself

Abstract

A partial characterization of the ion channels formed by the SARS coronavirus (CoV) envelope (E) protein was previously reported (C. Verdiá-Báguena et al., 2012 [12]). Here, we provide new significant insights on the involvement of lipids in the structure and function of the CoV E protein channel on the basis of three series of experiments. First, reversal potential measurements over a wide range of pH allow the dissection of the contributions to channel selectivity coming from ionizable residues of the protein transmembrane domain and also from the negatively charged groups of diphytanoyl phosphatidylserine (DPhPS) lipid. The corresponding effective pKas are consistent with the model pKas of the acidic residue candidates for titration. Second, the change of channel conductance with salt concentration reveals two distinct regimes (Donnan-controlled electrodiffusion and bulk-like electrodiffusion) fully compatible with the outcomes of selectivity experiments. Third, by measuring channel conductance in mixtures of neutral diphytanoyl phosphatidylcholine (DPhPC) lipids and negatively charged DPhPS lipids in low and high salt concentrations we conclude that the protein-lipid conformation in the channel is likely the same in charged and neutral lipids. Overall, the whole set of experiments supports the proteolipidic structure of SARS-CoV E channels and explains the large difference in channel conductance observed between neutral and charged membranes.

Indexed as

Amino Acid SequenceHydrogen-Ion ConcentrationIon ChannelsIon TransportLipid BilayersMembrane PotentialsModels, MolecularMolecular Sequence DataPhosphatidylcholinesPhosphatidylserinesPotassiumProtein Structure, TertiarySevere acute respiratory syndrome-related coronavirusStatic ElectricityViral Envelope ProteinsViroporin Proteins1,2-diphytanoylphosphatidylcholineE protein, SARS coronavirusIon ChannelsLipid BilayersPhosphatidylcholinesPhosphatidylserinesPotassiumViral Envelope ProteinsViroporin ProteinsCoronavirusEnvelope proteinIon channelLipid chargeSARS

Identifiers

PMID23688394
PMCPMC3715572
OpenAlexW2100707762

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.