Evidence map›Paper›PMID 23687292›Full record

ArticleThe Journal of infectious diseases2013

Nucleoside reverse transcriptase inhibitor resistance mutations associated with first-line stavudine-containing antiretroviral therapy: programmatic implications for countries phasing out stavudine.

Michele W Tang, Soo-Yon Rhee, Silvia Bertagnolio, Nathan Ford, Susan Holmes, Kim C Sigaloff, Raph L Hamers, Tobias F Rinke de Wit, Herve J Fleury, Phyllis J Kanki and 40 more

Registry-linked trialOpen access · bronzeAbstract read
In one paragraph

Article in The Journal of infectious diseases, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT00433030 (Observational Cohort of HIV Infected Adults and Children in the PHPT Network Hospitals in Thailand), which is not on this map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT00433030 completednot on this map

Observational Cohort of HIV Infected Adults and Children in the PHPT Network Hospitals in Thailand

TypeobservationalSponsorInstitut de Recherche pour le DeveloppementRan2007 to 2018Enrolled2,816ConditionsHIV Infections
3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 34 citations in OpenAlex.

  1. Observational
  2. Article
  3. Article
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  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Mechanisms of Accelerated Liver Fibrosis Progression during HIV Infection.Journal of clinical and translational hepatology · 2016
    Review
  14. Article
  15. Article
  16. Article
  17. Next generation sequencing improves detection of drug resistance mutations in infants after PMTCT failure.Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology · 2015
    Article
  18. Article
  19. Article
  20. Drug susceptibility and resistance mutations after first-line failure in resource limited settings.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2014
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

50 authors at 20 institutions in 17 countries.

Michele W TangDivision Infectious Diseases, Department of Medicine, Stanford University, California 94305, USA. micheletang@gmail.com
Soo-Yon Rhee
Silvia Bertagnolio
Nathan Ford
Susan Holmes
Kim C Sigaloff
Raph L Hamers
Tobias F Rinke de Wit
Herve J Fleury
Phyllis J Kanki
Kiat Ruxrungtham
Claudia A Hawkins
Carole L Wallis
Wendy Stevens
Gert U van Zyl
Weerawat Manosuthi
Mina C Hosseinipour
Nicole Ngo-Giang-Huong
Laurent Belec
Martine Peeters
Avelin Aghokeng
Torsak Bunupuradah
Sherri Burda
Patricia Cane
Giulia Cappelli
Charlotte Charpentier
Anoumou Y Dagnra
Alaka K Deshpande
Ziad El-Katib
Susan H Eshleman
Joseph Fokam
Jean-Chrysostome Gody
David Katzenstein
Donato D Koyalta
Johnstone J Kumwenda
Marc Lallemant
Lutgarde Lynen
Vincent C Marconi
Nicolas A Margot
Sandrine Moussa
Thumbi Ndung'u
Phillipe N Nyambi
Catherine Orrell
Jonathan M Schapiro
Rob Schuurman
Sunee Sirivichayakul
Davey Smith
Maria Zolfo
Michael R Jordan
Robert W Shafer
Stanford University · USAmsterdam UMC Location University of Amsterdam · NLInstitut Pasteur de Bangui · CFHarvard University · USThai Red Cross Society · THUniversité de Montpellier · FRWorld Health Organization · CHCentre Hospitalier Universitaire de Bordeaux · FRCentre International De Reference Chantal Biya · CMDélégation Paris 5 · FRDesmond Tutu HIV Foundation · ZAEmory University · USGilead Sciences (United States) · USGrant Medical College and Sir Jamshedjee Jeejeebhoy Group of Hospitals · INHIV Netherlands Australia Thailand Research Collaboration · THInstitut de Recherche pour le Développement · CGJohns Hopkins University · USKamuzu Central Hospital · MWLaboratoire National de Référence · MALancet Laboratories · ZA

Funding

PUBLIC HIV DRUG RESISTANCE DATABASER01AI068581 · NIAID · STANFORD UNIVERSITY · PI SHAFER, ROBERT WILLIAM · 2006 to 2017
$6.2M
NIAID NIH HHS 1R01AI68581NIAID NIH HHS R01 AI068581PHS HHS 1F32 A1098594
6 · The paper itself

Abstract

backgroundThe World Health Organization Antiretroviral Treatment Guidelines recommend phasing-out stavudine because of its risk of long-term toxicity. There are two mutational pathways of stavudine resistance with different implications for zidovudine and tenofovir cross-resistance, the primary candidates for replacing stavudine. However, because resistance testing is rarely available in resource-limited settings, it is critical to identify the cross-resistance patterns associated with first-line stavudine failure.

methodsWe analyzed HIV-1 resistance mutations following first-line stavudine failure from 35 publications comprising 1,825 individuals. We also assessed the influence of concomitant nevirapine vs. efavirenz, therapy duration, and HIV-1 subtype on the proportions of mutations associated with zidovudine vs. tenofovir cross-resistance.

resultsMutations with preferential zidovudine activity, K65R or K70E, occurred in 5.3% of individuals. Mutations with preferential tenofovir activity, ≥ two thymidine analog mutations (TAMs) or Q151M, occurred in 22% of individuals. Nevirapine increased the risk of TAMs, K65R, and Q151M. Longer therapy increased the risk of TAMs and Q151M but not K65R. Subtype C and CRF01_AE increased the risk of K65R, but only CRF01_AE increased the risk of K65R without Q151M.

conclusionsRegardless of concomitant nevirapine vs. efavirenz, therapy duration, or subtype, tenofovir was more likely than zidovudine to retain antiviral activity following first-line d4T therapy.

Indexed as

Drug Resistance, ViralAdenineAlkynesAnti-Retroviral AgentsBenzoxazinesCyclopropanesDatabases, FactualDrug Therapy, CombinationGenotypeHIV-1HIV InfectionsHumansMutation, MissenseNevirapineOrganophosphonatesReverse Transcriptase InhibitorsAdenineAlkynesAnti-Retroviral AgentsBenzoxazinesCyclopropanesefavirenzNevirapineOrganophosphonatesReverse Transcriptase InhibitorsRNA, ViralStavudineTenofovirZidovudineAZTd4Tdrug resistanceHIV-1mutationsNRTInucleoside reverse transcriptase inhibitorstavudinesubtypesTDFtenofovirzidovudine

Identifiers

PMID23687292
PMCPMC3657117
OpenAlexW2079791067

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.