Evidence map›Paper›PMID 23685278›Full record

ArticleClinical immunology (Orlando, Fla.)2013

Identification of gene microarray expression profiles in patients with chronic graft-versus-host disease following allogeneic hematopoietic cell transplantation.

Holbrook E Kohrt, Lu Tian, Li Li, Ash A Alizadeh, Sue Hsieh, Robert J Tibshirani, Samuel Strober, Minnie Sarwal, Robert Lowsky

Open access · greenAbstract read
In one paragraph

Article in Clinical immunology (Orlando, Fla.), 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed, 1 pooled it
1.0field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 1 synthesis or guideline pooled it, 13 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Mesenchymal stem cells prolong the survival of orthotopic liver transplants by regulating the expression of TGF-β1.The Turkish journal of gastroenterology : the official journal of Turkish Society of Gastroenterology · 2018
    Article
  4. Emerging role of C5a/C5aR IL-17A axis in cGVHD.American journal of translational research · 2018
    Article
  5. Review
  6. Article
  7. National Institutes of Health Consensus Development Project on Criteria for Clinical Trials in Chronic Graft-versus-Host Disease: III. The 2014 Biomarker Working Group Report.Biology of blood and marrow transplantation : journal of the American Society for Blood and Marrow Transplantation · 2015
    Article
  8. Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Holbrook E KohrtDepartment of Medicine Stanford University School of Medicine, 300 Pasteur Drive, Stanford, CA 94305 USA.
Lu Tian
Li Li
Ash A Alizadeh
Sue Hsieh
Robert J Tibshirani
Samuel Strober
Minnie Sarwal
Robert Lowsky
Stanford University · US

Funding

TUMOR SPECIFIC CYTOTOXIC T-LYMPHOCYTES IN BONE MARROW TRANSPLANTATIONP01CA049605 · NCI · STANFORD UNIVERSITY · PI David B. Miklos · 1989 to 2026
$73.3M
Translational Oncology Research Program (Project-005)P30CA124435 · NCI · STANFORD UNIVERSITY · PI Melinda L. Telli · 2007 to 2026
$71.4M
TLI/ATG CONDTIONING: KIDNEY/BLOOD STEM CELL TRANSPLANTSP01HL075462 · NHLBI · STANFORD UNIVERSITY · PI ENGLEMAN, EDGAR G. · 2004 to 2020
$27.9M
BMT Core - Stanford UniversityUG1HL069291 · NHLBI · STANFORD UNIVERSITY · PI Lori Muffly · 2017 to 2026
$1.7M
Gene and Cytokine Expression in Tolerance and GVHDR01AI085024 · NIAID · STANFORD UNIVERSITY · PI LOWSKY, ROBERT, SARWAL, MINNIE M · 2009 to 2012
$1.6M
NCI NIH HHS 1P030CA124435-01NCI NIH HHS P01 CA049605NCI NIH HHS P30 CA124435NHLBI NIH HHS P01 HL075462NHLBI NIH HHS UG1 HL069291NIAID NIH HHS R01 AI085024
6 · The paper itself

Abstract

Chronic graft-versus-host disease (GVHD) results in significant morbidity and mortality, limiting the benefit of allogeneic hematopoietic cell transplantation (HCT). Peripheral blood gene expression profiling of the donor immune repertoire following HCT may provide associated genes and pathways thereby improving the pathophysiologic understanding of chronic GVHD. We profiled 70 patients and identified candidate genes that provided mechanistic insight in the biologic pathways that underlie chronic GVHD. Our data revealed that the dominant gene signature in patients with chronic GVHD represented compensatory responses that control inflammation and included the interleukin-1 decoy receptor, IL-1 receptor type II, and genes that were profibrotic and associated with the IL-4, IL-6 and IL-10 signaling pathways. In addition, we identified three genes that were important regulators of extracellular matrix. Validation of this discovery phase study will determine if the identified genes have diagnostic, prognostic or therapeutic implications.

Indexed as

AdultCohort StudiesCross-Sectional StudiesFemaleGene Expression ProfilingGraft vs Host DiseaseHematopoietic Stem Cell TransplantationHumansMaleMiddle AgedOligonucleotide Array Sequence AnalysisProspective StudiesRetrospective StudiesReverse Transcriptase Polymerase Chain ReactionRNAYoung AdultRNA

Identifiers

PMID23685278
PMCPMC8166221
OpenAlexW2037934790

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.