Evidence map›Paper›PMID 23684799›Full record

ArticleDNA repair2013

PARP-mediated repair, homologous recombination, and back-up non-homologous end joining-like repair of single-strand nicks.

Michael J Metzger, Barry L Stoddard, Raymond J Monnat

Abstract read
In one paragraph

Article in DNA repair, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 49 citations in OpenAlex.

  1. Dynamic Assemblies in Genome Maintenance.Advances in experimental medicine and biology · 2026
    Review
  2. Review
  3. Review
  4. Article
  5. Article
  6. The Role of DNA Repair in Genomic Instability of Multiple Myeloma.International journal of molecular sciences · 2022
    Review
  7. Article
  8. Review
  9. Article
  10. Novel allosteric PARP1 inhibitors for the treatment of BRCA-deficient leukemia.Medicinal chemistry research : an international journal for rapid communications on design and mechanisms of action of biologically active agents · 2020
    Article
  11. Article
  12. Article
  13. Review
  14. Advances and perspectives of PARP inhibitors.Experimental hematology & oncology · 2019
    Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Michael J MetzgerDivision of Basic Sciences, Fred Hutchinson Cancer Research Center, 1100 Fairview Ave. N., Seattle, WA 98109, USA. mm4184@columbia.edu
Barry L Stoddard
Raymond J Monnat
Fred Hutch Cancer Center · USUniversity of Washington · US

Funding

Tumor mutation signaturesP01CA077852 · NCI · UNIVERSITY OF WASHINGTON · PI MONNAT, RAYMOND J · 1999 to 2019
$26.0M
Chromosome Metabolism and Cancer Training GrantT32CA009657 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI EISENMAN, ROBERT NEIL · 1991 to 2020
$7.6M
CELL, MOLECULAR AND DEVELOPMENTAL BIOLOGY OF CANCERT32CA009503 · NCI · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI GAUTIER, JEAN · 1985 to 2016
$6.8M
Structure, function &engineering of nuclease catalystsR01GM049857 · NIGMS · FRED HUTCHINSON CANCER RESEARCH CENTER · PI STODDARD, BARRY L. · 1994 to 2014
$4.2M
Structural and Biophysical Characterization of Engineered Homing Endonucleases (CRL1CA133833 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI STODDARD, BARRY L. · 2007 to 2011
$2.1M
NEW LAGLIDADG HOMING ENDONUCLEASES FOR GENOME ENGINEERING (Component 2 of 11)RL1CA133831 · NCI · UNIVERSITY OF WASHINGTON · PI MONNAT, RAYMOND J · 2007 to 2011
$1.9M
NCI NIH HHS CA009503NCI NIH HHS CA009657NCI NIH HHS P01 CA077852NCI NIH HHS P01 CA77852NCI NIH HHS RL1 CA133831NCI NIH HHS RL1 CA133833NCI NIH HHS T32 CA009503NCI NIH HHS T32 CA009657NIGMS NIH HHS R01 GM049857NIGMS NIH HHS R01 GM49857
6 · The paper itself

Abstract

Double-strand breaks (DSBs) in chromosomal DNA can induce both homologous recombination (HR) and non-homologous end-joining (NHEJ). Recently we showed that single-strand nicks induce HR with a significant reduction in toxicity and mutagenic effects associated with NHEJ. To further investigate the differences and similarities of DSB- and nick-induced repair, we used an integrated reporter system in human cells to measure HR and NHEJ produced by the homing endonuclease I-AniI and a designed 'nickase' variant that nicks the same target site, focusing on the PARP and HR repair pathways. PARP inhibitors, which block single-strand break repair, increased the rate of nick-induced HR up to 1.7-fold but did not affect DSB-induced HR or mutNHEJ. Additionally, expression of the PALB2 WD40 domain in trans acted as a dominant-negative inhibitor of both DSB- and nick-induced HR, sensitized cells to PARP inhibition, and revealed an alternative mutagenic repair pathway for nicks. Thus, while both DSB- and nick-induced HR use a common pathway, their substrates are differentially processed by cellular factors. These results also suggest that the synthetic lethality of PARP and BRCA may be due to repair of nicks through an error prone, NHEJ-like mechanism that is active when both PARP and HR pathways are blocked.

Indexed as

DNA Breaks, Double-StrandedDNA Breaks, Single-StrandedDNA End-Joining RepairRecombinational DNA RepairBRCA2 ProteinDeoxyribonucleases, Type I Site-SpecificFanconi Anemia Complementation Group N ProteinHEK293 CellsHumansNuclear ProteinsPoly(ADP-ribose) Polymerase InhibitorsPoly(ADP-ribose) PolymerasesProtein Structure, TertiaryTumor Suppressor ProteinsBRCA2 ProteinDeoxyribonucleases, Type I Site-SpecificFanconi Anemia Complementation Group N ProteinNuclear ProteinsPALB2 protein, humanPoly(ADP-ribose) Polymerase InhibitorsPoly(ADP-ribose) PolymerasesTumor Suppressor Proteins

Identifiers

PMID23684799
PMCPMC3683368
OpenAlexW2073694771

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.