Evidence map›Paper›PMID 23684751›Full record

ArticleGastroenterology2013

Chitin-binding domains of Escherichia coli ChiA mediate interactions with intestinal epithelial cells in mice with colitis.

Daren Low, Hoa T Tran, In-Ah Lee, Nicolas Dreux, Alan Kamba, Hans-Christian Reinecker, Arlette Darfeuille-Michaud, Nicolas Barnich, Emiko Mizoguchi

Abstract read
In one paragraph

Article in Gastroenterology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 62 papers.

0numbers the graph read from it
0cells of the map it votes in
62citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

62 citing papers in PubMed, 98 citations in OpenAlex.

  1. Adherent-InvasiveMicroorganisms · 2026
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  17. Identification of differences in gene expression implicated in the Adherent-InvasiveFrontiers in cellular and infection microbiology · 2023
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  19. Article
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2 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Daren LowDepartment of Medicine, Harvard Medical School, Boston, MA, USA.
Hoa T Tran
In-Ah Lee
Nicolas Dreux
Alan Kamba
Hans-Christian Reinecker
Arlette Darfeuille-Michaud
Nicolas Barnich
Emiko Mizoguchi
Harvard University · USInstitut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement · FRUniversité Clermont Auvergne · FR

Funding

Pilot & Feasibility ProgramP30DK043351 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI RAYMOND T CHUNG · 1991 to 2026
$35.3M
Xenograft and Isograft CoreP01DK033506 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI WALKER, W ALLAN · 1986 to 2015
$24.2M
Antigen Recognition at Intestinal Epithelial InterphasesR01DK068181 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI REINECKER, HANS-CHRISTIAN · 2005 to 2017
$5.2M
Role of Mammalian Chitinases in Inflammatory Bowel DiseaseR01DK080070 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI MIZOGUCHI, EMIKO · 2009 to 2013
$1.6M
TNF Receptors of Colonic Epithelial Cells in IBDK08DK064289 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI MIZOGUCHI, EMIKO · 2003 to 2007
$637k
Mechanisms of Innate Immune Regulation for Mucosal HomeostasisR56AI093588 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI REINECKER, HANS-CHRISTIAN · 2011 to 2011
$362k
Regulatory Role of TNFR1 in Inflammatory Bowel DiseaseR03DK074454 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI MIZOGUCHI, EMIKO · 2006 to 2007
$172k
NIAID NIH HHS R56 AI093588NIDDK NIH HHS K08 DK064289NIDDK NIH HHS P01 DK033506NIDDK NIH HHS P30 DK043351NIDDK NIH HHS R01 DK068181NIDDK NIH HHS R01 DK080070NIDDK NIH HHS R03 DK074454
6 · The paper itself

Abstract

BACKGROUND &

aimsInducible chitinase 3-like-1 is expressed by intestinal epithelial cells (IECs) and adheres to bacteria under conditions of inflammation. We performed a structure-function analysis of the chitin-binding domains encoded by the chiA gene, which mediates the pathogenic effects of adherent invasive Escherichia coli (AIEC).

methodsWe created AIEC (strain LF82) with deletion of chiA (LF82-ΔchiA) or that expressed chiA with specific mutations. We investigated the effects of infecting different IEC lines with these bacteria compared with nonpathogenic E coli; chitinase activities were measured using the colloidal chitin-azure method. Colitis was induced in C57/Bl6 mice by administration of dextran sodium sulfate, and mice were given 10(8) bacteria for 15 consecutive days by gavage. Stool/tissue samples were collected and analyzed.

resultsLF82-ΔchiA had significantly less adhesion to IEC lines than LF82. Complementation of LF82-ΔchiA with the LF82 chiA gene, but not chiA from nonpathogenic (K12) E coli, increased adhesion. We identified 5 specific polymorphisms in the chitin-binding domain of LF82 chiA (at amino acids 362, 370, 378, 388, and 548) that differ from chiA of K12 and were required for LF82 to interact directly with IECs. This interaction was mediated by an N-glycosylated asparagine in chitinase 3-like-1 (amino acid 68) on IECs. Mice infected with LF82, or LF82-ΔchiA complemented with LF82 chiA, developed more severe colitis after administration of dextran sodium sulfate than mice infected with LF82-ΔchiA or LF82 that expressed mutant forms of chiA.

conclusionsAIEC adheres to an N-glycosylated chitinase 3-like-1 on IECs via the chitin-binding domain of chiA. This mechanism promotes the pathogenic effects of AIEC in mice with colitis.

Indexed as

Adhesins, Escherichia coliAnimalsBacterial AdhesionBiomarkersCell LineChitinase-3-Like Protein 1ChitinasesColitisDextran SulfateEpithelial CellsEscherichia coliEscherichia coli InfectionsGlycoproteinsGlycosylationHumansIntestinal MucosaAdhesins, Escherichia coliBiomarkersChil1 protein, mouseChitinase-3-Like Protein 1chitinase ChiAChitinasesDextran SulfateGlycoproteinsadherent-invasive Escherichia coliAIECBacterial InfectionCBDCDCHI3L1chitinase 3-like-1chitin-binding domainCrohn's diseasedextran sulfate sodiumDSSIBDIECIFNILinflammatory bowel diseaseinterferoninterleukinintestinal epithelial celllamina propriaLPMouse ModelTNFtumor necrosis factorUlcerative Colitiswild typeWT

Identifiers

PMID23684751
PMCPMC3755095
OpenAlexW1972212346

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.