Evidence map›Paper›PMID 23684307›Full record

ArticleCell host & microbe2013

The unfolded protein response element IRE1α senses bacterial proteins invading the ER to activate RIG-I and innate immune signaling.

Jin A Cho, Ann-Hwee Lee, Barbara Platzer, Benedict C S Cross, Brooke M Gardner, Heidi De Luca, Phi Luong, Heather P Harding, Laurie H Glimcher, Peter Walter and 4 more

RetractedOpen access · greenAbstract readRetracted Publication
In one paragraph

Article in Cell host & microbe, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It has been retracted, and should not be counted. Cited by 66 papers.

0numbers the graph read from it
0cells of the map it votes in
66citing papers in PubMed
8.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

66 citing papers in PubMed, 95 citations in OpenAlex.

  1. Article
  2. Evolutionary Aspects of the Unfolded Protein Response.Cold Spring Harbor perspectives in biology · 2022
    Article
  3. Review
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  7. A modified cholera toxin B subunit containing an ER retention motif enhances colon epithelial repairFASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2019
    Article
  8. Review
  9. Article
  10. Review
  11. Article
  12. Article
  13. Review
  14. Article
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  18. Article
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  20. Review

6 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 2 countries.

Jin A ChoDepartment of Medicine, Division of GI Cell Biology, Boston Children's Hospital, Boston, MA 02115, USA.
Ann-Hwee LeeHarvard Digestive Diseases Center, Harvard Medical School, Boston, MA 02115, USA; Department of Pathology and Laboratory Medicine, Weill Cornell Medical College, New York, NY 10065, USA.
Barbara PlatzerDepartment of Medicine, Division of GI Cell Biology, Boston Children's Hospital, Boston, MA 02115, USA.
Benedict C S CrossUniversity of Cambridge Metabolic Research Laboratories and NIHR Cambridge Biomedical Research Centre, Cambridge CB2 0QQ, UK.
Brooke M GardnerDepartment of Biochemistry and Biophysics, University of California, San Francisco, CA 94158-2517, USA.
Heidi De LucaDepartment of Medicine, Division of GI Cell Biology, Boston Children's Hospital, Boston, MA 02115, USA.
Phi LuongDepartment of Medicine, Division of GI Cell Biology, Boston Children's Hospital, Boston, MA 02115, USA.
Heather P HardingUniversity of Cambridge Metabolic Research Laboratories and NIHR Cambridge Biomedical Research Centre, Cambridge CB2 0QQ, UK.
Laurie H GlimcherHarvard Digestive Diseases Center, Harvard Medical School, Boston, MA 02115, USA; Department of Medicine, Weill Cornell Medical College, New York, NY 10065, USA.
Peter WalterDepartment of Biochemistry and Biophysics, University of California, San Francisco, CA 94158-2517, USA; Howard Hughes Medical Institute.
Edda FiebigerDepartment of Medicine, Division of GI Cell Biology, Boston Children's Hospital, Boston, MA 02115, USA; Harvard Digestive Diseases Center, Harvard Medical School, Boston, MA 02115, USA.
David RonUniversity of Cambridge Metabolic Research Laboratories and NIHR Cambridge Biomedical Research Centre, Cambridge CB2 0QQ, UK.
Jonathan C KaganDepartment of Medicine, Division of GI Cell Biology, Boston Children's Hospital, Boston, MA 02115, USA; Harvard Digestive Diseases Center, Harvard Medical School, Boston, MA 02115, USA.
Wayne I LencerDepartment of Medicine, Division of GI Cell Biology, Boston Children's Hospital, Boston, MA 02115, USA; Harvard Digestive Diseases Center, Harvard Medical School, Boston, MA 02115, USA. Electronic address: wayne.lencer@childrens.harvard.edu.
Boston Children's Hospital · USHarvard University · USNIHR Cambridge Biomedical Research CentreUniversity of California, San Francisco · USUniversity of Cambridge · GB

Funding

STRUCTURE-FUNCTION RELATIONSHIPS IN THE ALIMENTARY TRACTP30DK034854 · NIDDK · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI Scott B Snapper · 1986 to 2026
$32.4M
Mechanism of action for the epithelial-specific ER stress sensor IRE1β in regulating intestinal homeostasis and host defenseR01DK048106 · NIDDK · CHILDREN'S HOSPITAL BOSTON · PI WAYNE I LENCER · 1993 to 2026
$9.6M
Intestinal Disease-enterocyte toxin interactionR37DK048106 · NIDDK · BOSTON CHILDREN'S HOSPITAL · PI LENCER, WAYNE I · 2011 to 2020
$7.0M
TRANSCRIPTIONAL REGULATION OF THE IMMUNE RESPONSER01AI032412 · NIAID · HARVARD UNIVERSITY (SCH OF PUBLIC HLTH) · PI GLIMCHER, LAURIE HOLLIS · 1991 to 2010
$4.6M
Initiation and Regulation of Antiviral Innate ImmunityR01AI093589 · NIAID · BOSTON CHILDREN'S HOSPITAL · PI KAGAN, JONATHAN C · 2011 to 2020
$4.4M
Studies of Fc-epsilon-RI as an antigen presentation structure at mucosal surfacesR01AI075037 · NIAID · BOSTON CHILDREN'S HOSPITAL · PI FIEBIGER, ELISABETH EDDA · 2009 to 2013
$2.0M
FcRn-dependent sorting of IgG and IgG-opsinized antigens by epithelial cellsR01DK084424 · NIDDK · BOSTON CHILDREN'S HOSPITAL · PI LENCER, WAYNE I · 2009 to 2013
$1.9M
Regulation of Triglyceride Metabolism by the transcription factor CREB-HR01DK089211 · NIDDK · WEILL MEDICAL COLL OF CORNELL UNIV · PI LEE, ANN HWEE · 2011 to 2015
$1.8M
From Sugar to Fat: How Transcription Factor XBP1 Regulates Hepatic LipogenesisR01DK082448 · NIDDK · WEILL MEDICAL COLL OF CORNELL UNIV · PI GLIMCHER, LAURIE HOLLIS · 2010 to 2014
$1.7M
Impact of aryl hydrocarbon receptor ligand ingestion on gastrointestinal immunityK01DK093597 · NIDDK · BOSTON CHILDREN'S HOSPITAL · PI PLATZER, BARBARA · 2012 to 2015
$625k
Initiation and Regulation of Antiviral Innate ImmunityR56AI093589 · NIAID · BOSTON CHILDREN'S HOSPITAL · PI KAGAN, JONATHAN C · 2021 to 2021
$531k
Unsaturated glycoceramide as novel platform for mucosal vaccine and drug deliveryR21DK090603 · NIDDK · BOSTON CHILDREN'S HOSPITAL · PI LENCER, WAYNE I · 2010 to 2011
$473k
Howard Hughes Medical InstituteNIAID NIH HHS AI093589NIAID NIH HHS R01 AI032412NIAID NIH HHS R01 AI075037NIAID NIH HHS R01AI075037NIAID NIH HHS R01 AI093589NIAID NIH HHS R56 AI093589NIDDK NIH HHS 1K01DK093597-01A1NIDDK NIH HHS DK083894NIDDK NIH HHS DK084424NIDDK NIH HHS DK090603NIDDK NIH HHS DK48106NIDDK NIH HHS F32 DK081256NIDDK NIH HHS F32 DK083894NIDDK NIH HHS K01 DK093597NIDDK NIH HHS P30 DK034854NIDDK NIH HHS P30 DK34854NIDDK NIH HHS R01 DK048106NIDDK NIH HHS R01 DK082448NIDDK NIH HHS R01DK082448NIDDK NIH HHS R01 DK084424NIDDK NIH HHS R01 DK089211NIDDK NIH HHS R01DK089211NIDDK NIH HHS R21 DK090603NIDDK NIH HHS R37 DK048106Wellcome Trust 084812Wellcome Trust 084812/Z/08/Z
6 · The paper itself

Abstract

The plasma membrane and all membrane-bound organelles except for the Golgi and endoplasmic reticulum (ER) are equipped with pattern-recognition molecules to sense microbes or their products and induce innate immunity for host defense. Here, we report that inositol-requiring-1α (IRE1α), an ER protein that signals in the unfolded protein response (UPR), is activated to induce inflammation by binding a portion of cholera toxin as it co-opts the ER to cause disease. Other known UPR transducers, including the IRE1α-dependent transcription factor XBP1, are dispensable for this signaling. The inflammatory response depends instead on the RNase activity of IRE1α to degrade endogenous mRNA, a process termed regulated IRE1α-dependent decay (RIDD) of mRNA. The mRNA fragments produced engage retinoic-acid inducible gene 1 (RIG-I), a cytosolic sensor of RNA viruses, to activate NF-κB and interferon pathways. We propose IRE1α provides for a generalized mechanism of innate immune surveillance originating within the ER lumen.

Indexed as

Immunity, InnateSignal TransductionCell LineCholera ToxinDEAD Box Protein 58DEAD-box RNA HelicasesEndoribonucleasesHumansProtein BindingProtein Serine-Threonine KinasesReceptors, ImmunologicCholera ToxinDEAD Box Protein 58DEAD-box RNA HelicasesEndoribonucleasesERN1 protein, humanProtein Serine-Threonine KinasesReceptors, ImmunologicRIGI protein, human

Identifiers

PMID23684307
PMCPMC3766372
OpenAlexW2094415496

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.