Evidence map›Paper›PMID 23684012›Full record

ArticleAmerican journal of human genetics2013

Germline BAP1 mutations predispose to renal cell carcinomas.

Tatiana Popova, Lucie Hebert, Virginie Jacquemin, Sophie Gad, Virginie Caux-Moncoutier, Catherine Dubois-d'Enghien, Bénédicte Richaudeau, Xavier Renaudin, Jason Sellers, André Nicolas and 24 more

Open access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 138 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
138citing papers in PubMed, 4 pooled it
14.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

138 citing papers in PubMed, 4 syntheses or guidelines pooled it, 273 citations in OpenAlex.

  1. Guideline
  2. New developments in existing WHO entities and evolving molecular concepts: The Genitourinary Pathology Society (GUPS) update on renal neoplasia.Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc · 2021
    Guideline
  3. A Systematic Literature Review of Whole Exome and Genome Sequencing Population Studies of Genetic Susceptibility to Cancer.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2020
    Pooled it
  4. Pooled it
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Short Report: The Variants inJournal of clinical medicine · 2025
    Article
  12. Article
  13. Article
  14. Genetic study of thePractical laboratory medicine · 2024
    Article
  15. Review
  16. Deubiquitinases in cancer.Nature reviews. Cancer · 2023
    Review
  17. Article
  18. Review
  19. Review
  20. Review

78 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

34 authors at 9 institutions in 1 country.

Tatiana PopovaInstitut Curie, Inserm U830, Paris 75248, France.
Lucie Hebert
Virginie Jacquemin
Sophie Gad
Virginie Caux-Moncoutier
Catherine Dubois-d'Enghien
Bénédicte Richaudeau
Xavier Renaudin
Jason Sellers
André Nicolas
Xavier Sastre-Garau
Laurence Desjardins
Gabor Gyapay
Virginie Raynal
Olga M Sinilnikova
Nadine Andrieu
Elodie Manié
Antoine de Pauw
Paul Gesta
Valérie Bonadona
Christine M Maugard
Clotilde Penet
Marie-Françoise Avril
Emmanuel Barillot
Odile Cabaret
Olivier Delattre
Stéphane Richard
Olivier Caron
Meriem Benfodda
Hui-Han Hu
Nadem Soufir
Brigitte Bressac-de Paillerets
Dominique Stoppa-Lyonnet
Marc-Henri Stern
Inserm · FRInstitut Curie · FRDélégation Paris 5 · FRUniversité Claude Bernard Lyon 1 · FRCentre Hospitalier de Niort · FRCommissariat à l'Énergie Atomique et aux Énergies Alternatives · FRHôpital Civil, Strasbourg · FRInstitut Gustave Roussy · FRInstitut Jean Godinot · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The genetic cause of some familial nonsyndromic renal cell carcinomas (RCC) defined by at least two affected first-degree relatives is unknown. By combining whole-exome sequencing and tumor profiling in a family prone to cases of RCC, we identified a germline BAP1 mutation c.277A>G (p.Thr93Ala) as the probable genetic basis of RCC predisposition. This mutation segregated with all four RCC-affected relatives. Furthermore, BAP1 was found to be inactivated in RCC-affected individuals from this family. No BAP1 mutations were identified in 32 familial cases presenting with only RCC. We then screened for germline BAP1 deleterious mutations in familial aggregations of cancers within the spectrum of the recently described BAP1-associated tumor predisposition syndrome, including uveal melanoma, malignant pleural mesothelioma, and cutaneous melanoma. Among the 11 families that included individuals identified as carrying germline deleterious BAP1 mutations, 6 families presented with 9 RCC-affected individuals, demonstrating a significantly increased risk for RCC. This strongly argues that RCC belongs to the BAP1 syndrome and that BAP1 is a RCC-predisposition gene.

Indexed as

Germ-Line MutationMutation, MissenseAdultBase SequenceCarcinoma, Renal CellExomeFemaleGenetic Association StudiesGenetic Predisposition to DiseaseHumansKidney NeoplasmsMaleMiddle AgedPedigreePolymorphism, Single NucleotideSequence Analysis, DNABAP1 protein, humanTumor Suppressor ProteinsUbiquitin Thiolesterase

Identifiers

PMID23684012
PMCPMC3675229
OpenAlexW2047777235

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.