Evidence map›Paper›PMID 23677492›Full record

ArticleCellular and molecular life sciences : CMLS2013

Protecting a transgene expression from the HAC-based vector by different chromatin insulators.

Nicholas C O Lee, Artem V Kononenko, Hee-Sheung Lee, Elena N Tolkunova, Mikhail A Liskovykh, Hiroshi Masumoto, William C Earnshaw, Alexey N Tomilin, Vladimir Larionov, Natalay Kouprina

Open access · hybridAbstract read
In one paragraph

Article in Cellular and molecular life sciences : CMLS, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
3.2field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 25 citations in OpenAlex.

  1. Review
  2. Rapid assembly of functional modules for generating human artificial chromosome constructs compatible with epigenetic centromere seeding.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2025
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Human AlphoidCells · 2020
    Article
  10. Review
  11. Article
  12. TAR Cloning: Perspectives for Functional Genomics, Biomedicine, and Biotechnology.Molecular therapy. Methods & clinical development · 2019
    Review
  13. Article
  14. Alpha satellite DNA biology: finding function in the recesses of the genome.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2018
    Review
  15. Article
  16. Article
  17. Article
  18. A pathway from chromosome transfer to engineering resulting in human and mouse artificial chromosomes for a variety of applications to bio-medical challenges.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2015
    Review
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 4 countries.

Nicholas C O LeeLaboratories of Molecular Pharmacology, National Cancer Institute, Bethesda, MD, 20892, USA.
Artem V Kononenko
Hee-Sheung Lee
Elena N Tolkunova
Mikhail A Liskovykh
Hiroshi Masumoto
William C Earnshaw
Alexey N Tomilin
Vladimir Larionov
Natalay Kouprina
National Cancer Institute · USInstitute of Cytology · RUKazusa DNA Research Institute · JPUniversity of Edinburgh · GB

Funding

Intramural NIH HHSWellcome Trust 073915Wellcome Trust 092076
6 · The paper itself

Abstract

Human artificial chromosomes (HACs) are vectors that offer advantages of capacity and stability for gene delivery and expression. Several studies have even demonstrated their use for gene complementation in gene-deficient recipient cell lines and animal transgenesis. Recently, we constructed an advance HAC-based vector, alphoid(tetO)-HAC, with a conditional centromere. In this HAC, a gene-loading site was inserted into a centrochromatin domain critical for kinetochore assembly and maintenance. While by definition this domain is permissive for transcription, there have been no long-term studies on transgene expression within centrochromatin. In this study, we compared the effects of three chromatin insulators, cHS4, gamma-satellite DNA, and tDNA, on the expression of an EGFP transgene inserted into the alphoid(tetO)-HAC vector. Insulator function was essential for stable expression of the transgene in centrochromatin. In two analyzed host cell lines, a tDNA insulator composed of two functional copies of tRNA genes showed the highest barrier activity. We infer that proximity to centrochromatin does not protect genes lacking chromatin insulators from epigenetic silencing. Barrier elements that prevent gene silencing in centrochromatin would thus help to optimize transgenesis using HAC vectors.

Indexed as

Chromosomes, Artificial, HumanTransgenesAnimalsCell Line, TumorCHO CellsChromatinCricetinaeCricetulusDNA, SatelliteGene ExpressionGene SilencingGenetic VectorsGreen Fluorescent ProteinsHeLa CellsHumansRNA, TransferChromatinDNA, Satelliteenhanced green fluorescent proteinGreen Fluorescent ProteinsRNA, Transfer

Identifiers

PMID23677492
PMCPMC3771377
OpenAlexW2042351446

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.