Evidence map›Paper›PMID 23676757›Full record

ArticleGenes and immunity2013

Identification of biomarkers for Mycobacterium tuberculosis infection and disease in BCG-vaccinated young children in Southern India.

S Dhanasekaran, S Jenum, R Stavrum, C Ritz, D Faurholt-Jepsen, J Kenneth, M Vaz, H M S Grewal, T M Doherty, TB Trials Study Group

Open access · bronzeAbstract read
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In one paragraph

Article in Genes and immunity, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed, 2 pooled it
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 2 syntheses or guidelines pooled it, 38 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

S DhanasekaranDepartment of Clinical Science, Faculty of Medicine and Dentistry, University of Bergen, Bergen, Norway.
S Jenum
R Stavrum
C Ritz
D Faurholt-Jepsen
J Kenneth
M Vaz
H M S Grewal
T M Doherty
TB Trials Study Group
University of Copenhagen · DKHaukeland University Hospital · NOUniversity of Bergen · NOOslo University Hospital · NO

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Pediatric tuberculosis (TB) often goes undiagnosed because of the lack of reliable diagnostic methods. With the aim of assessing biomarker(s) that can aid in the diagnosis of TB infection and disease, we investigated 746 Indian children with suspected TB. Whole-blood mRNA from 210 children was examined by dual-color Reverse-Transcriptase Multiple Ligation-dependent Probe-Amplification for the expression of 45 genes and a Bio-Plex assay for the expression of cytokines/chemokines in QuantiFERON supernatants. The study shows that transcription of SEC14L1, GUSB, BPI, CCR7 and TGFβ-1 (all P ≤ 0.05) was downregulated in TB disease compared with uninfected controls, while transcription of RAB33A was downregulated in TB disease compared with both latent TB (P < 0.05) and controls (P < 0.01). The transcription of CD4, TGFβ-1 (P < 0.01) and the expression of IL-2 (P < 0.01) and IL-13 (P < 0.05) was upregulated in latent TB compared with that in controls. Using the Least Absolute Shrinkage and Selection Operator (lasso) model, RAB33A alone discriminated between TB disease and latent TB (area under the curve (AUC) 77.5%), whereas a combination of RAB33A, CXCL10, SEC14L1, FOXP3 and TNFRSF1A was effective in discriminating between TB disease and controls (AUC 91.7%). A combination of 11 biomarkers predicted latent TB with moderate discriminatory power (AUC 72.2%). In conclusion, RAB33A is a potential biomarker for TB disease, whereas CD4, TGFβ-1 and IL-2, IL-13 may identify latent TB in children.

Indexed as

BCG VaccineBiomarkersCarrier ProteinsCase-Control StudiesCD4 AntigensChemokine CXCL10Child, PreschoolFemaleForkhead Transcription FactorsHumansIndiaInfantInfant, NewbornInterleukin-13Interleukin-2MaleBCG VaccineBiomarkersCarrier ProteinsCD4 AntigensChemokine CXCL10CXCL10 protein, humanForkhead Transcription FactorsFOXP3 protein, humanIL13 protein, humanIL2 protein, humanInterleukin-13Interleukin-2RAB33A protein, humanrab GTP-Binding ProteinsReceptors, Tumor Necrosis Factor, Type IRNA, MessengerSEC14L1 protein, humanTNFRSF1A protein, humanTransforming Growth Factor beta1

Identifiers

PMID23676757
OpenAlexW2151655299

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.