Evidence map›Paper›PMID 23676432›Full record

ArticleMicrobiology (Reading, England)2013

Characterization of genes required for the pathogenicity of Pectobacterium carotovorum subsp. carotovorum Pcc21 in Chinese cabbage.

Dong Hwan Lee, Jeong-A Lim, Juneok Lee, Eunjung Roh, Kyusuk Jung, Minseon Choi, Changsik Oh, Sangryeol Ryu, Jongchul Yun, Sunggi Heu

Open access · greenAbstract read
In one paragraph

Article in Microbiology (Reading, England), 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
6.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 78 citations in OpenAlex.

  1. Article
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  9. A Switch from Latent to Typical Infection duringInternational journal of molecular sciences · 2023
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Isolation and Genome Analysis ofFrontiers in plant science · 2022
    Article
  16. Understanding Host-Pathogen Interactions inPlants (Basel, Switzerland) · 2020
    Review
  17. Article
  18. Distribution ofThe plant pathology journal · 2020
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Dong Hwan LeeDivision of Microbial Safety, National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, Republic of Korea.
Jeong-A LimDivision of Microbial Safety, National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, Republic of Korea.
Juneok LeeDivision of Microbial Safety, National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, Republic of Korea.
Eunjung RohDivision of Microbial Safety, National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, Republic of Korea.
Kyusuk JungDivision of Microbial Safety, National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, Republic of Korea.
Minseon ChoiDepartment of Horticultural Biotechnology and Institute of Life Science & Resources, Kyung Hee University, Yongin 441-701, Republic of Korea.
Changsik OhDepartment of Horticultural Biotechnology and Institute of Life Science & Resources, Kyung Hee University, Yongin 441-701, Republic of Korea.
Sangryeol RyuDepartment of Agricultural Biotechnology, Center for Agricultural Biomaterials, Research Institute for Agriculture and Life Sciences, Seoul National University, Seoul 151-921, Republic of Korea.
Jongchul YunDivision of Microbial Safety, National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, Republic of Korea.
Sunggi HeuDivision of Microbial Safety, National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, Republic of Korea.
National Academy of Agricultural Science · KRRural Development Administration · KRKyung Hee University · KRSeoul National University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Pectobacterium carotovorum subsp. carotovorum is a well-known plant pathogen that causes severe soft rot disease in various crops, resulting in considerable economic loss. To identify pathogenicity-related factors, Chinese cabbage was inoculated with 5314 transposon mutants of P. carotovorum subsp. carotovorum Pcc21 derived using Tn5 transposon mutagenesis. A total of 35 reduced-virulence or avirulent mutants were isolated, and 14 loci were identified. The 14 loci could be functionally grouped into nutrient utilization (pyrD, purH, purD, leuA and serB), production of plant cell-wall-degrading enzymes (PCWDEs) (expI, expR and PCC21_023220), motility (flgA, fliA and flhB), biofilm formation (expI, expR and qseC), susceptibility to antibacterial plant chemicals (tolC) and unknown function (ECA2640). Among the 14 genes identified, qseC, tolC and PCC21_023220 are novel pathogenicity factors of P. carotovorum subsp. carotovorum involved in biofilm formation, phytochemical resistance and PCWDE production, respectively.

Indexed as

Gene Expression Regulation, BacterialAnti-Bacterial AgentsBacterial ProteinsBiofilmsBrassicaDNA Transposable ElementsDrug Resistance, BacterialMicrobial Sensitivity TestsMutagenesis, InsertionalPectobacterium carotovorumPlant DiseasesVirulenceVirulence FactorsAnti-Bacterial AgentsBacterial ProteinsDNA Transposable ElementsVirulence Factors

Identifiers

PMID23676432
PMCPMC3749726
OpenAlexW2164037972

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.