Evidence map›Paper›PMID 23674682›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2013

Direct interaction between the TnsA and TnsB subunits controls the heteromeric Tn7 transposase.

Ki Young Choi, Ying Li, Robert Sarnovsky, Nancy L Craig

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Mechanistic details of CRISPR-associated transposon recruitment and integration revealed by cryo-EM.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  10. Article
  11. Metagenomic discovery of CRISPR-associated transposons.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  12. Detection of TnFrontiers in microbiology · 2020
    Article
  13. Review
  14. Recruitment of CRISPR-Cas systems by Tn7-like transposons.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  15. Article
  16. Mechanisms of DNA Transposition.Microbiology spectrum · 2015
    Review
  17. The Tn7 transposition regulator TnsC interacts with the transposase subunit TnsB and target selector TnsD.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Ki Young ChoiDepartment of Molecular Biology and Genetics and Howard Hughes Medical Institute, The Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.
Ying Li
Robert Sarnovsky
Nancy L Craig

Funding

Transposition of Tn7 and HermesR01GM076425 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI CRAIG, NANCY CRAIG · 2006 to 2009
$1.6M
Howard Hughes Medical InstituteNIGMS NIH HHS R01 GM076425NIGMS NIH HHS R01GM076425
6 · The paper itself

Abstract

The transposon Tn7 transposase that recognizes the transposon ends and mediates breakage and joining is heteromeric. It contains the Tn7-encoded proteins TnsB, which binds specifically to the transposon ends and carries out breakage and joining at the 3' ends, and TnsA, which carries out breakage at the 5' ends of Tn7. TnsA apparently does not bind specifically to DNA, and we have hypothesized that it is recruited to the ends by interaction with TnsB. In this work, we show that TnsA and TnsB interact directly and identify several TnsA and TnsB amino acids involved in this interaction. We also show that TnsA can stimulate two key activities of TnsB, specific binding to the ends and pairing of the Tn7 ends. The ends of Tn7 are structurally asymmetric (i.e., contain different numbers of TnsB-binding sites), and Tn7 also is functionally asymmetric, inserting into its specific target site, attachment site attTn7 (attTn7) in a single orientation. Moreover, Tn7 elements containing two Tn7 right ends can transpose, but elements with two Tn7 left ends cannot. We show here that TnsA + TnsB are unable to pair the ends of a Tn7 element containing two Tn7 left ends. This pairing defect likely contributes to the inability of Tn7 elements with two Tn7 left ends to transpose.

Indexed as

Amino Acid SequenceBase SequenceBinding SitesBlotting, SouthernBlotting, WesternDNA-Binding ProteinsDNA PrimersDNA Transposable ElementsElectrophoresis, Polyacrylamide GelElectrophoretic Mobility Shift AssayEscherichia coliEscherichia coli ProteinsMolecular Sequence DataMutation, MissenseProtein SubunitsTransposasesDNA-Binding ProteinsDNA PrimersDNA Transposable ElementsEscherichia coli ProteinsProtein SubunitsTnsA protein, E coliTnsB protein, E coliTransposasesasymmetric transposon endsprotein-DNA interactionprotein–protein interactiontransposition

Identifiers

PMID23674682
PMCPMC3670325

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.