Evidence map›Paper›PMID 23674615›Full record

ArticleMolecular & cellular proteomics : MCP2013

Mapping the extracellular and membrane proteome associated with the vasculature and the stroma in the embryo.

Fabienne Soulet, Witold W Kilarski, Florence Roux-Dalvai, John M J Herbert, Izabela Sacewicz, Emmanuelle Mouton-Barbosa, Roy Bicknell, Patricia Lalor, Bernard Monsarrat, Andreas Bikfalvi

Open access · hybridAbstract read
In one paragraph

Article in Molecular & cellular proteomics : MCP, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.4field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 25 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 7 institutions in 2 countries.

Fabienne SouletINSERM, U1029, 33405 Talence, France.
Witold W Kilarski
Florence Roux-Dalvai
John M J Herbert
Izabela Sacewicz
Emmanuelle Mouton-Barbosa
Roy Bicknell
Patricia Lalor
Bernard Monsarrat
Andreas Bikfalvi
Inserm · FRUniversity of Birmingham · GBCentre National de la Recherche Scientifique · FRNIHR Birmingham Biomedical Research Centre · GBUniversité de Bordeaux · FRUniversité Fédérale de Toulouse Midi-Pyrénées · FRUniversité Toulouse III - Paul Sabatier · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In order to map the extracellular or membrane proteome associated with the vasculature and the stroma in an embryonic organism in vivo, we developed a biotinylation technique for chicken embryo and combined it with mass spectrometry and bioinformatic analysis. We also applied this procedure to implanted tumors growing on the chorioallantoic membrane or after the induction of granulation tissue. Membrane and extracellular matrix proteins were the most abundant components identified. Relative quantitative analysis revealed differential protein expression patterns in several tissues. Through a bioinformatic approach, we determined endothelial cell protein expression signatures, which allowed us to identify several proteins not yet reported to be associated with endothelial cells or the vasculature. This is the first study reported so far that applies in vivo biotinylation, in combination with robust label-free quantitative proteomics approaches and bioinformatic analysis, to an embryonic organism. It also provides the first description of the vascular and matrix proteome of the embryo that might constitute the starting point for further developments.

Indexed as

AnimalsAvian ProteinsBiotinylationCell Line, TumorChick EmbryoChorioallantoic MembraneEndothelial CellsExtracellular Matrix ProteinsHumansIntestine, SmallKidneyLiverMembrane ProteinsNeoplasmsProteomeAvian ProteinsExtracellular Matrix ProteinsMembrane ProteinsProteome

Identifiers

PMID23674615
PMCPMC3734586
OpenAlexW1975102003

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.