Evidence map›Paper›PMID 23672311›Full record

ArticleJournal of biomolecular structure & dynamics2014

Identification of antagonists to the vasotocin receptor sub-type 4 (VT4R) involved in stress by molecular modelling and verification using anterior pituitary cells.

Srinivas Jayanthi, Seong Wook Kang, Daniel Bingham, Brian A Tessaro, Thallapuranam K Suresh Kumar, Wayne J Kuenzel

Open access · greenAbstract read
In one paragraph

Article in Journal of biomolecular structure & dynamics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
1.6field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Srinivas Jayanthi *Department of Chemistry and Biochemistry, University of Arkansas, Fayetteville, AR 72701, USA.
Seong Wook Kang *Department of Poultry Sciences, University of Arkansas, Fayettevillez, AR 72701, USA.
Daniel BinghamDepartment of Chemistry and Biochemistry, University of Arkansas, Fayetteville, AR 72701, USA.
Brian A TessaroDepartment of Poultry Sciences, University of Arkansas, Fayettevillez, AR 72701, USA.
Thallapuranam K Suresh KumarDepartment of Chemistry and Biochemistry, University of Arkansas, Fayetteville, AR 72701, USA.
Wayne J KuenzelDepartment of Poultry Sciences, University of Arkansas, Fayettevillez, AR 72701, USA.
University of Arkansas at Fayetteville · US

Funding

Center for Protein Structure and FunctionP30GM103450 · NIGMS · UNIVERSITY OF ARKANSAS AT FAYETTEVILLE · PI MILLETT, FRANCIS S · 2012 to 2014
$3.2M
NIGMS NIH HHS P30 GM 103450NIGMS NIH HHS P30 GM103450
6 · The paper itself

Abstract

The vasotocin receptor family is homologous to the mammalian vasopressin G-protein coupled receptor (GPCR) family. The vasotocin receptor 2 (VT2R) and 4 (VT4R) have recently been shown to play important role(s) in the neuroendocrine regulation of stress in birds. A homology-based structural model of VT4R of the domestic chicken, Gallus gallus, was built using the sophisticated SYBYL-X suite. The structure of VT4R built with and without extra- and intracellular unstructured loops showed a seven-helix transmembrane domain, which is a characteristic feature of GPCRs. Several agonists and antagonists were screened by molecular docking to map their potential binding sites on the structure of VT4R. Interestingly, the presence of the N-terminal, intracellular and extracellular loops and C-terminal amino acid sequences emerging from the transmembrane domains during molecular docking appeared to influence the binding interface of the peptide agonists and peptide/non-peptide antagonists on the VT4R. The presence of unstructured loops, however, did not affect the relative binding affinity ranking of the peptide antagonists to VT4R. In general, the natural ligand, arginine vasotocin and the peptide/non-peptide antagonists were observed to be more deeply buried in the receptor. Results of in vitro inhibition experiments, using cultured anterior pituitary cells, showed excellent agreement with the binding affinity of the antagonists predicted by molecular docking. The results of this study provide valuable clues for the rational design of novel pharmaceutical compounds capable of blocking or attenuating the stress response.

Indexed as

Models, MolecularAnimalsAntidiuretic Hormone Receptor AntagonistsBinding SitesBirdsCells, CulturedLigandsMaleMolecular Dynamics SimulationPituitary Gland, AnteriorProtein BindingProtein ConformationReceptors, VasopressinStress, PhysiologicalAntidiuretic Hormone Receptor AntagonistsLigandsReceptors, Vasopressinvasotocin receptor

Identifiers

PMID23672311
PMCPMC4035235
OpenAlexW2150181255

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.