Evidence map›Paper›PMID 23671672›Full record

ArticlePloS one2013

Role of sodium in the RprY-dependent stress response in Porphyromonas gingivalis.

Karthik Krishnan, Margaret J Duncan

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.5field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 15 citations in OpenAlex.

  1. Virulence diversity amongJournal of oral microbiology · 2026
    Review
  2. Review
  3. Article
  4. Article
  5. Research progress on two-component signal transduction systems inHua xi kou qiang yi xue za zhi = Huaxi kouqiang yixue zazhi = West China journal of stomatology · 2021
    Review
  6. Article
  7. Review
  8. Post-translational regulation of aJournal of oral microbiology · 2018
    Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Karthik KrishnanDepartment of Microbiology, The Forsyth Institute, Cambridge, Massachusetts, United States of America.
Margaret J Duncan
Harvard University · US

Funding

Genomics of Gene Regulation in Porphyromonas gingivalisR01DE015931 · NIDCR · FORSYTH INSTITUTE · PI DUNCAN, MARGARET J · 2004 to 2012
$4.4M
NIDCR NIH HHS R01 DE015931NIDCR NIH HHS R01-DE015931
6 · The paper itself

Abstract

Porphyromonas gingivalis is a Gram-negative oral anaerobe which is strongly associated with periodontal disease. Environmental changes in the gingival sulcus trigger the growth of P. gingivalis and a concurrent shift from periodontal health to disease. Bacteria adjust their physiology in response to environmental changes and gene regulation by two-component phospho-relay systems is one mechanism by which such adjustments are effected. In P. gingivalis RprY is an orphan response regulator and previously we showed that the RprY regulon included genes associated with oxidative stress and sodium metabolism. The goals of the present study were to identify environmental signals that induce rprY and clarify the role of the regulator in the stress response. In Escherichia coli an RprY-LacZ fusion protein was induced in sodium- depleted medium and a P. gingivalis rprY mutant was unable to grow in similar medium. By several approaches we established that sodium depletion induced up-regulation of genes involved in oxidative stress. In addition, we demonstrated that RprY interacted directly with the promoters of several molecular chaperones. Further, both genetic and transcription data suggest that the regulator acts as a repressor. We conclude that RprY is one of the regulators that controls stress responses in P. gingivalis, possibly by acting as a repressor since an rprY mutant showed a superstress reponse in sodium-depleted medium which we propose inhibited growth.

Indexed as

Oxidative StressBacterial ProteinsGene Expression Regulation, BacterialHeat-Shock ProteinsOsmoregulationPorphyromonas gingivalisPromoter Regions, GeneticSodium ChlorideTranscriptional ActivationTranscription FactorsTranscriptomeBacterial ProteinsHeat-Shock ProteinsSodium ChlorideTranscription Factors

Identifiers

PMID23671672
PMCPMC3646045
OpenAlexW1988276850

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.