Evidence map›Paper›PMID 23671665›Full record

ArticlePloS one2013

Identification and characterization of SMARCAL1 protein complexes.

Rémy Bétous, Gloria G Glick, Runxiang Zhao, David Cortez

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Review
  8. Functions of SMARCAL1, ZRANB3, and HLTF in maintaining genome stability.Critical reviews in biochemistry and molecular biology · 2017
    Review
  9. Review
  10. Review
  11. SMARCAL1 maintains telomere integrity during DNA replication.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Replication fork recovery and regulation of common fragile sites stability.Cellular and molecular life sciences : CMLS · 2014
    Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 2 countries.

Rémy BétousDepartment of Biochemistry, Vanderbilt University School of Medicine, Nashville, Tennessee, USA.
Gloria G Glick
Runxiang Zhao
David Cortez
Vanderbilt University · US

Funding

Transcription-Coupled & Replication-Associated Excision RepairP01CA092584 · NCI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI John A. Tainer · 2001 to 2026
$89.6M
SMARCAL1 function in replication stress and diseaseR01CA160432 · NCI · VANDERBILT UNIVERSITY · PI CORTEZ, DAVID K, EISCHEN, CHRISTINE M. · 2012 to 2016
$2.3M
Functional Analysis of Replication Stress Response ProteinsR01CA136933 · NCI · VANDERBILT UNIVERSITY · PI CORTEZ, DAVID K · 2009 to 2013
$1.6M
NCI NIH HHS P01 CA092584NCI NIH HHS R01 CA136933NCI NIH HHS R01 CA160432NIGMS NIH HHS R01GM160342
6 · The paper itself

Abstract

SMARCAL1 is an ATPase in the SNF2 family that functions at damaged replication forks to promote their stability and restart. It acts by translocating on DNA to catalyze DNA strand annealing, branch migration, and fork regression. Many SNF2 enzymes work as motor subunits of large protein complexes. To determine if SMARCAL1 is also a member of a protein complex and to further understand how it functions in the replication stress response, we used a proteomics approach to identify interacting proteins. In addition to the previously characterized interaction with replication protein A (RPA), we found that SMARCAL1 forms complexes with several additional proteins including DNA-PKcs and the WRN helicase. SMARCAL1 and WRN co-localize at stalled replication forks independently of one another. The SMARCAL1 interaction with WRN is indirect and is mediated by RPA acting as a scaffold. SMARCAL1 and WRN act independently to prevent MUS81 cleavage of the stalled fork. Biochemical experiments indicate that both catalyze fork regression with SMARCAL1 acting more efficiently and independently of WRN. These data suggest that RPA brings a complex of SMARCAL1 and WRN to stalled forks, but that they may act in different pathways to promote fork repair and restart.

Indexed as

DNA ReplicationCell Line, TumorDNADNA-Binding ProteinsDNA Breaks, Double-StrandedDNA HelicasesDNA RepairEndonucleasesExodeoxyribonucleasesHEK293 CellsHeLa CellsHumansImmunoblottingImmunoprecipitationMass SpectrometryNucleic Acid ConformationDNADNA-Binding ProteinsDNA HelicasesEndonucleasesExodeoxyribonucleasesMUS81 protein, humanRecQ HelicasesReplication Protein ASMARCAL1 protein, humanWerner Syndrome HelicaseWRN protein, human

Identifiers

PMID23671665
PMCPMC3650004
OpenAlexW1974258987

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.