Evidence map›Paper›PMID 23671416›Full record

Trial reportPLoS pathogens2013

Challenges in detecting HIV persistence during potentially curative interventions: a study of the Berlin patient.

Steven A Yukl, Eli Boritz, Michael Busch, Christopher Bentsen, Tae-Wook Chun, Daniel Douek, Evelyn Eisele, Ashley Haase, Ya-Chi Ho, Gero Hütter and 18 more

Registry-linked trialOpen access · goldAbstract readClinical Trial
In one paragraph

Trial report in PLoS pathogens, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT02042248 (IGHID 1309 -A Phase I Study to Evaluate the Kinetics of the Immunologic Response and Virologic Impact of AGS-004 in HIV-Infected Individuals Suppressed on Antiretroviral Therapy Initiated During Acute and Chronic HIV Infection), which is not on this map. Cited by 163 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
163citing papers in PubMed, 1 pooled it
19.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT02042248 phase1completednot on this mapstarted 2014, after this paper: background citation

IGHID 1309 -A Phase I Study to Evaluate the Kinetics of the Immunologic Response and Virologic Impact of AGS-004 in HIV-Infected Individuals Suppressed on Antiretroviral Therapy Initiated During Acute and Chronic HIV Infection

TypeinterventionalSponsorCynthia L Gay, MDRan2014 to 2016Enrolled6ConditionsHIVArmsAGS-004
3 · Its place in the literature

Who cites it

163 citing papers in PubMed, 1 synthesis or guideline pooled it, 290 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Trial
  4. Trial
  5. Trial
  6. Trial
  7. Article
  8. Review
  9. HIV controllers: hope for a functional cure.Frontiers in immunology · 2025
    Review
  10. Review
  11. Article
  12. Legacy of a magic gene-Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  13. Review
  14. CXCR4 Is a Potential Target for Anti-HIV Gene Therapy.International journal of molecular sciences · 2024
    Review
  15. Article
  16. Review
  17. Prevention, treatment and cure of HIV infection.Nature reviews. Microbiology · 2023
    Review
  18. Review
  19. Article
  20. Review

103 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

28 authors at 12 institutions in 3 countries.

Steven A YuklSan Francisco VA Medical Center and University of California, San Francisco, San Francisco, California, United States of America.
Eli Boritz
Michael Busch
Christopher Bentsen
Tae-Wook Chun
Daniel Douek
Evelyn Eisele
Ashley Haase
Ya-Chi Ho
Gero Hütter
J Shawn Justement
Sheila Keating
Tzong-Hae Lee
Peilin Li
Danielle Murray
Sarah Palmer
Christopher Pilcher
Satish Pillai
Richard W Price
Meghan Rothenberger
Timothy Schacker
Janet Siliciano
Robert Siliciano
Elizabeth Sinclair
Matt Strain
Joseph Wong
Douglas Richman
Steven G Deeks
National Institutes of Health · USUniversity of California, San Francisco · USBlood Systems Research Institute · USJohns Hopkins University · USSan Francisco VA Medical Center · USUniversity of Minnesota · USBio-Rad (United States) · USHeidelberg University · DEJohns Hopkins Medicine · USKarolinska Institutet · SEUniversity of California, San Diego · USVA San Diego Healthcare System · US

Funding

UCSF CLINICAL AND TRANSLATIONAL SCIENCE INSTITUTEUL1RR024131 · NCRR · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI JOHNSTON, S. CLAIBORNE · 2006 to 2011
$111.2M
Virology CoreP30AI027763 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI STEVEN Grant DEEKS · 1988 to 2026
$93.6M
UCSD Department of Medicine HIV/AIDS Clinical Trials UnitUM1AI069432 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI TIMOTHY J. WILKIN · 2012 to 2026
$50.4M
Using NK Cells to eliminate the latent HIV reservoirU19AI096113 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI LUCIW, PAUL · 2011 to 2015
$39.5M
Viral reservoirs and sanctuaries in HAART - treated patients: role and mechanismsU19AI096109 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SCHACKER, TIMOTHY W · 2011 to 2015
$29.5M
Role of Viral Reservoirs in the Pathogenesis of HIV DiseaseZIAAI000851 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI CHUN, TAE-WOOK · 2009 to 2025
$29.3M
Transmission ProbabilityP01AI074621 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI RICHMAN, DOUGLAS D · 2008 to 2012
$23.1M
Primary Infection Resource Consortium (PIRC)R24AI106039 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI LITTLE, SUSAN JANET · 2013 to 2021
$23.1M
UCSD Department of Medicine HIV/AIDS Clinical Trials UnitU01AI069432 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI BENSON, CONSTANCE ANN · 2007 to 2011
$19.3M
Transmission and Persistence of CTL and Drug Resistance MutationsP01AI071713 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI HECHT, FREDERICK M · 2007 to 2011
$14.3M
Virological Measurements of Cryptic ReplicationP01AI074340 · NIAID · UNIVERSITY OF MINNESOTA · PI SCHACKER, TIMOTHY W · 2008 to 2012
$12.1M
Biomathematical analysis of viral dynamics/evolutionR01AI047745 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI RICHMAN, DOUGLAS D · 2001 to 2011
$3.2M
CSRD VA 1 IK2 CX000520-01CSRD VA IK2 CX000520NCRR NIH HHS UL1 RR024131NIAID NIH HHS AI047745NIAID NIH HHS AI 080193NIAID NIH HHS AI096113NIAID NIH HHS AI306214NIAID NIH HHS AI69432NIAID NIH HHS AI74621NIAID NIH HHS K24 AI069994NIAID NIH HHS P01 AI071713NIAID NIH HHS P01 AI074340NIAID NIH HHS P01 AI074621NIAID NIH HHS P01 AI080193NIAID NIH HHS P30 AI027763NIAID NIH HHS R01 AI047745NIAID NIH HHS R01 AI087145NIAID NIH HHS R21 AI047745NIAID NIH HHS R24 AI106039NIAID NIH HHS R56 AI047745NIAID NIH HHS U01 AI069432NIAID NIH HHS U19 AI096109NIAID NIH HHS U19AI0961090NIAID NIH HHS U19 AI096113NIAID NIH HHS UM1 AI069432NIMH NIH HHS R21 MH096619
6 · The paper itself

Abstract

There is intense interest in developing curative interventions for HIV. How such a cure will be quantified and defined is not known. We applied a series of measurements of HIV persistence to the study of an HIV-infected adult who has exhibited evidence of cure after allogeneic hematopoietic stem cell transplant from a homozygous CCR5Δ32 donor. Samples from blood, spinal fluid, lymph node, and gut were analyzed in multiple laboratories using different approaches. No HIV DNA or RNA was detected in peripheral blood mononuclear cells (PBMC), spinal fluid, lymph node, or terminal ileum, and no replication-competent virus could be cultured from PBMCs. However, HIV RNA was detected in plasma (2 laboratories) and HIV DNA was detected in the rectum (1 laboratory) at levels considerably lower than those expected in ART-suppressed patients. It was not possible to obtain sequence data from plasma or gut, while an X4 sequence from PBMC did not match the pre-transplant sequence. HIV antibody levels were readily detectable but declined over time; T cell responses were largely absent. The occasional, low-level PCR signals raise the possibility that some HIV nucleic acid might persist, although they could also be false positives. Since HIV levels in well-treated individuals are near the limits of detection of current assays, more sensitive assays need to be developed and validated. The absence of recrudescent HIV replication and waning HIV-specific immune responses five years after withdrawal of treatment provide proof of a clinical cure.

Indexed as

Hematopoietic Stem Cell TransplantationHIVAdultAllograftsAntibodies, ViralAnti-Retroviral AgentsDNA, ViralHIV InfectionsHumansRNA, ViralAntibodies, ViralAnti-Retroviral AgentsDNA, ViralRNA, Viral

Identifiers

PMID23671416
PMCPMC3649997
OpenAlexW2065379504

What OpenQuestion holds

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.