Evidence map›Paper›PMID 23671069›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2013

Visualization of pinholin lesions in vivo.

Ting Pang, Tinya C Fleming, Kit Pogliano, Ry Young

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
5.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 50 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Identifying components of theJournal of bacteriology · 2024
    Article
  5. Review
  6. Article
  7. Article
  8. Review
  9. Article
  10. Pinholin SBiochimica et biophysica acta. Biomembranes · 2021
    Article
  11. Antimicrobial Peptides: An Update on Classifications and Databases.International journal of molecular sciences · 2021
    Review
  12. Article
  13. Article
  14. Article
  15. Structural and functional characterization of the pore-forming domain of pinholin SProceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  16. International journal of molecular sciences · 2020
    Article
  17. Environmental Triggers ofFrontiers in microbiology · 2020
    Article
  18. Phage Lysis: Multiple Genes for Multiple Barriers.Advances in virus research · 2019
    Review
  19. Phage-Antibiotic Synergy via Delayed Lysis.Applied and environmental microbiology · 2018
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Ting PangCenter for Phage Technology, Department of Biochemistry and Biophysics, Texas A&M University, College Station, TX 77843-2128, USA.
Tinya C Fleming
Kit Pogliano
Ry Young
Texas A&M University · USUniversity of California, San Diego · US

Funding

VOLUMETRIC CONTOUR-BASED SURFACE RECONSTRUCTIONP41RR004050 · NCRR · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI PASQUALE, ELENA B · 1989 to 2011
$28.0M
FORESPORE ENGULFMENT DURING B SUBTILIS SPORULATIONR01GM057045 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI POGLIANO, KIT J · 1998 to 2021
$6.1M
CONTROL OF VIRUS-INDUCED LYSISR01GM027099 · NIGMS · TEXAS A&M UNIVERSITY HEALTH SCIENCE CTR · PI YOUNG, RYLAND FLETCHER · 1985 to 2019
$4.6M
CONTROL OF VIRUS INDUCED LYSISR37GM027099 · NIGMS · TEXAS A&M UNIVERSITY SYSTEM · PI YOUNG, RYLAND F. · 1996 to 2005
$2.4M
NCRR NIH HHS P41 RR004050NIGMS NIH HHS GM27099NIGMS NIH HHS GM57045NIGMS NIH HHS R01 GM027099NIGMS NIH HHS R01 GM057045NIGMS NIH HHS R37 GM027099NINDS NIH HHS P30 NS04710
6 · The paper itself

Abstract

Lambdoid phage 21 uses a pinholin-signal anchor release endolysin strategy to effect temporally regulated host lysis. In this strategy, the pinholin S(21)68 accumulates harmlessly in the bilayer until suddenly triggering to form lethal membrane lesions, consisting of S(21)68 heptamers with central pores <2 nm in diameter. The membrane depolarization caused by these pores activates the muralytic endolysin, R(21), leading immediately to peptidoglycan degradation. The lethal S(21)68 complexes have been designated as pinholes to distinguish from the micrometer-scale holes formed by canonical holins. Here, we used GFP fusions of WT and mutant forms of S(21)68 to show that the holin accumulates uniformly throughout the membrane until the time of triggering, when it suddenly redistributes into numerous small foci (rafts). Raft formation correlates with the depletion of the proton motive force, which is indicated by the potential-sensitive dye bis-(1,3-dibutylbarbituric acid)pentamethine oxonol. By contrast, GFP fusions of either antiholin variant irsS(21)68, which only forms inactive dimers, or nonlethal mutant S(21)68(S44C), which is blocked at an activated dimer stage of the pinhole formation pathway, were both blocked in a state of uniform distribution. In addition, fluorescence recovery after photobleaching revealed that, although the antiholin irsS(21)68-GFP fusion was highly mobile in the membrane (even when the proton motive force was depleted), more than one-half of the S(21)68-GFP molecules were immobile, and the rest were in mobile states with a much lower diffusion rate than the rate of irsS(21)68-GFP. These results suggest a model in which, after transiting into an oligomeric state, S(21)68 migrates into rafts with heterogeneous sizes, within which the final pinholes form.

Indexed as

BacteriolysisBarbituratesCell MembraneEscherichia coliFluorescence Recovery After PhotobleachingGreen Fluorescent ProteinsIsoxazolesMicroscopy, FluorescenceProton-Motive ForceSiphoviridaeTime-Lapse ImagingViral ProteinsBarbituratesbis(1,3-dibutylbarbiturate)trimethine oxonolGreen Fluorescent ProteinsIsoxazolesViral Proteinsbacteriophagemembrane potentialmembrane proteinstructured illumination microscopy

Identifiers

PMID23671069
PMCPMC3670314
OpenAlexW2008035355

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.