ReviewMolecular systems biology2013
Computational meta'omics for microbial community studies.
Review in Molecular systems biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 139 papers, 2 of them syntheses that pooled it.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
139 citing papers in PubMed, 2 syntheses or guidelines pooled it.
- A systematic review on omics data (metagenomics, metatranscriptomics, and metabolomics) in the role of microbiome in gallbladder disease.Frontiers in physiology · 2022Pooled it
- Recent Advanced Technologies for the Characterization of Xenobiotic-Degrading Microorganisms and Microbial Communities.Frontiers in bioengineering and biotechnology · 2021Pooled it
- Unveiling hidden microbial diversity in Mars 2020 mission assembly cleanrooms with molecular insights into the persistence and perseverance of novel species defying metagenome sequencing.Microbiology spectrum · 2026Article
- Inference of causal interaction networks of gut microbiota using transfer entropy.BMC genomics · 2025Article
- Spatial environmental heterogeneity of ocean currents affects pelagic ciliate community structure, assembly, and co-occurrence network complexity in the Scotia Sea, Antarctic.Marine life science & technology · 2025Article
- Review
- From Bioreactors to Organoids: Tools for Culturing and Understanding Microbiota.Indian journal of microbiology · 2025Review
- The impact of spray-induced gene silencing on cereal phyllosphere microbiota.Environmental microbiome · 2025Article
- Microbiome and Communication Disorders: A Tutorial for Clinicians.Journal of speech, language, and hearing research : JSLHR · 2025Review
- Exploring interspecific interaction variability in microbiota: A review.Engineering microbiology · 2024Review
- Comparative analysis of gut microbiota of Chinese Kunming dog, German Shepherd dog, and Belgian Malinois dog.Journal of veterinary science · 2024Article
- From soil to sequence: filling the critical gap in genome-resolved metagenomics is essential to the future of soil microbial ecology.Environmental microbiome · 2024Article
- Gut microbiota as a sensor of autoimmune response and treatment for rheumatoid arthritis.Immunological reviews · 2024Review
- A permutable MLP-like architecture for disease prediction from gut metagenomic data.BMC bioinformatics · 2024Article
- Microbiome modeling: a beginner's guide.Frontiers in microbiology · 2024Review
- Prokaryotic communities associated with marine hydrothermal systems of the Gulf of California.Frontiers in microbiology · 2024Article
- Research advancements on the diversity and host interaction of gut microbiota in chickens.Frontiers in veterinary science · 2024Review
- Statistical normalization methods in microbiome data with application to microbiome cancer research.Gut microbes · 2023Review
- PGPB and/or AM Fungi Consortia Affect Tomato Native Rhizosphere Microbiota.Microorganisms · 2023Article
- The Impact of a Commercial Biostimulant on the Grape Mycobiota ofMicroorganisms · 2023Article
79 more citing papers are in PubMed but not listed here.
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
6 authors.
Funding
Abstract
Complex microbial communities are an integral part of the Earth's ecosystem and of our bodies in health and disease. In the last two decades, culture-independent approaches have provided new insights into their structure and function, with the exponentially decreasing cost of high-throughput sequencing resulting in broadly available tools for microbial surveys. However, the field remains far from reaching a technological plateau, as both computational techniques and nucleotide sequencing platforms for microbial genomic and transcriptional content continue to improve. Current microbiome analyses are thus starting to adopt multiple and complementary meta'omic approaches, leading to unprecedented opportunities to comprehensively and accurately characterize microbial communities and their interactions with their environments and hosts. This diversity of available assays, analysis methods, and public data is in turn beginning to enable microbiome-based predictive and modeling tools. We thus review here the technological and computational meta'omics approaches that are already available, those that are under active development, their success in biological discovery, and several outstanding challenges.
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Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.