Evidence map›Paper›PMID 23667565›Full record

ArticlePloS one2013

The use of amino sugars by Bacillus subtilis: presence of a unique operon for the catabolism of glucosamine.

Isabelle Gaugué, Jacques Oberto, Harald Putzer, Jacqueline Plumbridge

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
4.2field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 43 citations in OpenAlex.

  1. Microbial Production ofFoods (Basel, Switzerland) · 2025
    Review
  2. Systems-wide analysis of the ROK-family regulatory geneApplied and environmental microbiology · 2023
    Article
  3. Article
  4. Lambda-PCR for precise DNA assembly and modification.Biotechnology and bioengineering · 2022
    Article
  5. Article
  6. Article
  7. The N-Acetylglucosamine Kinase fromInternational journal of molecular sciences · 2021
    Article
  8. Metabolism of Poly-β1,4-Journal of bacteriology · 2021
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. N-acetylglucosamine-Mediated Expression ofFrontiers in cellular and infection microbiology · 2016
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Isabelle GauguéCNRS-UPR9073, Affiliated with Université Diderot, Sorbonne Paris Cité, Institut de Biologie Physico-Chimique, Paris, France.
Jacques Oberto
Harald Putzer
Jacqueline Plumbridge
Expression Génétique Microbienne · FRInstitut de Biologie Physico-Chimique · FRUniversité Paris Cité · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

B. subtilis grows more rapidly using the amino sugar glucosamine as carbon source, than with N-acetylglucosamine. Genes for the transport and metabolism of N-acetylglucosamine (nagP and nagAB) are found in all the sequenced Bacilli (except Anoxybacillus flavithermus). In B. subtilis there is an additional operon (gamAP) encoding second copies of genes for the transport and catabolism of glucosamine. We have developed a method to make multiple deletion mutations in B. subtilis employing an excisable spectinomycin resistance cassette. Using this method we have analysed the contribution of the different genes of the nag and gam operons for their role in utilization of glucosamine and N-acetylglucosamine. Faster growth on glucosamine is due to the presence of the gamAP operon, which is strongly induced by glucosamine. Although the gamA and nagB genes encode isozymes of GlcN6P deaminase, catabolism of N-acetylglucosamine relies mostly upon the gamA gene product. The genes for use of N-acetylglucosamine, nagAB and nagP, are repressed by YvoA (NagR), a GntR family regulator, whose gene is part of the nagAB yvoA(nagR) operon. The gamAP operon is repressed by YbgA, another GntR family repressor, whose gene is expressed divergently from gamAP. The nagAB yvoA synton is found throughout the Bacilli and most firmicutes. On the other hand the ybgA-gamAP synton, which includes the ybgB gene for a small protein of unknown provenance, is only found in B. subtilis (and a few very close relatives). The origin of ybgBA-gamAP grouping is unknown but synteny analysis suggests lateral transfer from an unidentified donor. The presence of gamAP has enabled B. subtilis to efficiently use glucosamine as carbon source.

Indexed as

Bacillus subtilisBiological TransportBlotting, NorthernDNA PrimersGene Expression Regulation, BacterialGlucosamineMetabolic Networks and PathwaysMutagenesis, Site-DirectedOperonPlasmidsPolymerase Chain ReactionSequence DeletionSpectinomycinSyntenyDNA PrimersGlucosamineSpectinomycin

Identifiers

PMID23667565
PMCPMC3648570
OpenAlexW2060503634

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.