Evidence map›Paper›PMID 23667257›Full record

ArticleThe Journal of biological chemistry2013

Direct expression and validation of phage-selected peptide variants in mammalian cells.

Brian D Quinlan, Matthew R Gardner, Vinita R Joshi, Jessica J Chiang, Michael Farzan

Abstract readValidation Study
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. In vitro affinity maturation of broader and more-potent variants of the HIV-1-neutralizing antibody CAP256-VRC26.25.Proceedings of the National Academy of Sciences of the United States of America · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Brian D QuinlanDepartment of Infectious Diseases, The Scripps Research Institute, Jupiter, Florida 33458, USA. bquinlan@scripps.edu
Matthew R Gardner
Vinita R Joshi
Jessica J Chiang
Michael Farzan

Funding

Viral escape from AAV expressed transgenesP01AI100263 · NIAID · SCRIPPS FLORIDA · PI FARZAN, MICHAEL R. · 2012 to 2016
$11.9M
Therapeutic use of an enhanced form of CD4-IgR01AI091476 · NIAID · SCRIPPS FLORIDA · PI FARZAN, MICHAEL R. · 2011 to 2015
$4.3M
A double-mimetic inhibitor of HIV-1 entryR01AI080324 · NIAID · SCRIPPS FLORIDA · PI FARZAN, MICHAEL R. · 2009 to 2013
$2.3M
NIAID NIH HHS P01 AI100263NIAID NIH HHS R01 AI080324NIAID NIH HHS R01 AI091476
6 · The paper itself

Abstract

Phage display is a key technology for the identification and maturation of high affinity peptides, antibodies, and other proteins. However, limitations of bacterial expression restrict the range and sensitivity of assays that can be used to evaluate phage-selected variants. To address this problem, selected genes are typically transferred to mammalian expression vectors, a major rate-limiting step in the iterative improvement of peptides and proteins. Here we describe a system that combines phage display and efficient mammalian expression in a single vector, pDQ1. This system permits immediate expression of phage-selected genes as IgG1-Fc fusions in mammalian cells, facilitating the rapid, sensitive characterization of a large number of library outputs for their biochemical and functional properties. We demonstrate the utility of this system by improving the ability of a CD4-mimetic peptide to bind the HIV-1 envelope glycoprotein and neutralize HIV-1 entry. We further improved the potency of the resulting peptide, CD4mim6, by limiting its ability to induce the CD4-bound conformation of the envelope glycoprotein. Thus, CD4mim6 and its variants can be used to investigate the properties of the HIV-1 envelope glycoprotein, and pDQ1 can accelerate the discovery of new peptides and proteins through phage display.

Indexed as

Peptide LibraryAmino Acid SequenceAntibodiesAntiviral Agentsenv Gene Products, Human Immunodeficiency VirusFlow CytometryGenetic VectorsHEK293 CellsHIV-1HumansModels, MolecularMolecular Sequence DataReceptors, CCR5Surface Plasmon ResonanceVirus InternalizationAntibodiesAntiviral Agentsenv Gene Products, Human Immunodeficiency VirusPeptide LibraryReceptors, CCR5Antimicrobial PeptidesAntiviral AgentsFc Fusion ProteinHIV-1Human Immunodeficiency VirusImmunoadhesinPhage Display

Identifiers

PMID23667257
PMCPMC3696656

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.