Evidence map›Paper›PMID 23667253›Full record

ArticleThe Journal of biological chemistry2013

The Hbs1-Dom34 protein complex functions in non-stop mRNA decay in mammalian cells.

Syuhei Saito, Nao Hosoda, Shin-ichi Hoshino

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 104 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Syuhei SaitoDepartment of Biological Chemistry, Graduate School of Pharmaceutical Sciences, Nagoya City University, Nagoya 467-8603, Japan.
Nao Hosoda
Shin-ichi Hoshino
Nagoya City University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In yeast, aberrant mRNAs lacking in-frame termination codons are recognized and degraded by the non-stop decay (NSD) pathway. The recognition of non-stop mRNAs involves a member of the eRF3 family of GTP-binding proteins, Ski7. Ski7 is thought to bind the ribosome stalled at the 3'-end of the mRNA poly(A) tail and recruit the exosome to degrade the aberrant message. However, Ski7 is not found in mammalian cells, and even the presence of the NSD mechanism itself has remained enigmatic. Here, we show that unstable non-stop mRNA is degraded in a translation-dependent manner in mammalian cells. The decay requires another eRF3 family member (Hbs1), its binding partner Dom34, and components of the exosome-Ski complex (Ski2/Mtr4 and Dis3). Hbs1-Dom34 binds to form a complex with the exosome-Ski complex. Also, the elimination of aberrant proteins produced from non-stop transcripts requires the RING finger protein listerin. These findings demonstrate that the NSD mechanism exists in mammalian cells and involves Hbs1, Dom34, and the exosome-Ski complex.

Indexed as

RNA StabilityEndonucleasesExosome Multienzyme Ribonuclease ComplexGene ExpressionGene Knockdown TechniquesGTP-Binding ProteinsHalf-LifeHeLa CellsHSP70 Heat-Shock ProteinsHumansMicrofilament ProteinsNuclear ProteinsPeptide Elongation FactorsProtein BindingProtein BiosynthesisRNA-Binding ProteinsDIS3 protein, humanEndonucleasesExosome Multienzyme Ribonuclease ComplexGTP-Binding ProteinsHBS1L protein, humanHSP70 Heat-Shock ProteinsMicrofilament ProteinsNuclear Proteinspelo protein, humanPeptide Elongation FactorsRNA-Binding ProteinsRNA, MessengerRNA, Small InterferingeRF3ExosomesHbs1mRNA DecayNon-stop DecayRibosomesRNA TurnoverTranslation Release Factors

Identifiers

PMID23667253
PMCPMC3682582
OpenAlexW2006898408

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.