Evidence map›Paper›PMID 23667236›Full record

ArticleJournal of bacteriology2013

Analysis of two polyhydroxyalkanoate synthases in Bradyrhizobium japonicum USDA 110.

J Ignacio Quelas, Elías J Mongiardini, Julieta Pérez-Giménez, Gustavo Parisi, Aníbal R Lodeiro

Open access · bronzeAbstract read
In one paragraph

Article in Journal of bacteriology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
4.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 48 citations in OpenAlex.

  1. Article
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  5. Pleiotropic Effects of PhaR Regulator inInternational journal of molecular sciences · 2024
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  6. Biosynthesis of polyhydroxybutyrate byFrontiers in plant science · 2024
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  9. Review
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  11. Article
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  13. Efficacy of a Plant-Microbe System:Frontiers in microbiology · 2020
    Article
  14. Article
  15. Expanding the Regulon of theFrontiers in microbiology · 2019
    Article
  16. Article
  17. Article
  18. Review
  19. PHB Biosynthesis Counteracts Redox Stress inFrontiers in microbiology · 2018
    Article
  20. Induction byFrontiers in microbiology · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

J Ignacio QuelasInstituto de Biotecnología y Biología Molecular (IBBM), Departamento de Ciencias Biológicas, Facultad de Ciencias Exactas, Universidad Nacional de La Plata, and CCT La Plata-CONICET, La Plata, Argentina. quelas@biol.unlp.edu.ar
Elías J Mongiardini
Julieta Pérez-Giménez
Gustavo Parisi
Aníbal R Lodeiro
Instituto de Biotecnología y Biología Molecular · ARConsejo Nacional de Investigaciones Científicas y Técnicas · ARNational University of Quilmes · AR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bradyrhizobium japonicum USDA 110 has five polyhydroxyalkanoate (PHA) synthases (PhaC) annotated in its genome: bll4360 (phaC1), bll6073 (phaC2), blr3732 (phaC3), blr2885 (phaC4), and bll4548 (phaC5). All these proteins possess the catalytic triad and conserved amino acid residues of polyester synthases and are distributed into four different PhaC classes. We obtained mutants in each of these paralogs and analyzed phaC gene expression and PHA production in liquid cultures. Despite the genetic redundancy, only phaC1 and phaC2 were expressed at significant rates, while PHA accumulation in stationary-phase cultures was impaired only in the ΔphaC1 mutant. Meanwhile, the ΔphaC2 mutant produced more PHA than the wild type under this condition, and surprisingly, the phaC3 transcript increased in the ΔphaC2 background. A double mutant, the ΔphaC2 ΔphaC3 mutant, consistently accumulated less PHA than the ΔphaC2 mutant. PHA accumulation in nodule bacteroids followed a pattern similar to that seen in liquid cultures, being prevented in the ΔphaC1 mutant and increased in the ΔphaC2 mutant in relation to the level in the wild type. Therefore, we used these mutants, together with a ΔphaC1 ΔphaC2 double mutant, to study the B. japonicum PHA requirements for survival, competition for nodulation, and plant growth promotion. All mutants, as well as the wild type, survived for 60 days in a carbon-free medium, regardless of their initial PHA contents. When competing for nodulation against the wild type in a 1:1 proportion, the ΔphaC1 and ΔphaC1 ΔphaC2 mutants occupied only 13 to 15% of the nodules, while the ΔphaC2 mutant occupied 81%, suggesting that the PHA polymer is required for successful competitiveness. However, the bacteroid content of PHA did not affect the shoot dry weight accumulation.

Indexed as

AcyltransferasesBradyrhizobiumGene Knockout TechniquesMicrobial InteractionsMicrobial ViabilityPlant ShootsPolyhydroxyalkanoatesRoot Nodules, PlantAcyltransferasespoly(3-hydroxyalkanoic acid) synthasePolyhydroxyalkanoates

Identifiers

PMID23667236
PMCPMC3697631
OpenAlexW2125598256

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.