Evidence map›Paper›PMID 23666865›Full record

ArticleGenome biology and evolution2013

A large pseudoautosomal region on the sex chromosomes of the frog Silurana tropicalis.

Adam J Bewick, Frédéric J J Chain, Lyle B Zimmerman, Abdul Sesay, Michael J Gilchrist, Nick D L Owens, Eva Seifertova, Vladimir Krylov, Jaroslav Macha, Tereza Tlapakova and 4 more

Open access · goldAbstract read
In one paragraph

Article in Genome biology and evolution, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. A brief review of vertebrate sex evolution with a pledge for integrative research: towards 'Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2021
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Sex determination by multiple sex chromosomes in Xenopus tropicalis.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  13. Coexistence of Y, W, and Z sex chromosomes in Xenopus tropicalis.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 4 countries.

Adam J BewickDepartment of Biology, McMaster University, Hamilton, Ontario, Canada.
Frédéric J J Chain
Lyle B Zimmerman
Abdul Sesay
Michael J Gilchrist
Nick D L Owens
Eva Seifertova
Vladimir Krylov
Jaroslav Macha
Tereza Tlapakova
Svatava Kubickova
Halina Cernohorska
Vojtech Zarsky
Ben J Evans
Charles University · CZNational Institute for Health Research · GBMcMaster University · CAVeterinary Research Institute · CZMax Planck Society · DE

Funding

Genetic Analysis of Inner Ear Development in Xenopus tropicalisR01DC011901 · NIDCD · UNIVERSITY OF CALIFORNIA BERKELEY · PI HARLAND, RICHARD M · 2011 to 2015
$1.5M
Medical Research Council MC_U117560482Medical Research Council MC_U117597137Medical Research Council U117560482Medical Research Council U117597137NIDCD NIH HHS R01 DC011901
6 · The paper itself

Abstract

Sex chromosome divergence has been documented across phylogenetically diverse species, with amphibians typically having cytologically nondiverged ("homomorphic") sex chromosomes. With an aim of further characterizing sex chromosome divergence of an amphibian, we used "RAD-tags" and Sanger sequencing to examine sex specificity and heterozygosity in the Western clawed frog Silurana tropicalis (also known as Xenopus tropicalis). Our findings based on approximately 20 million genotype calls and approximately 200 polymerase chain reaction-amplified regions across multiple male and female genomes failed to identify a substantially sized genomic region with genotypic hallmarks of sex chromosome divergence, including in regions known to be tightly linked to the sex-determining region. We also found that expression and molecular evolution of genes linked to the sex-determining region did not differ substantially from genes in other parts of the genome. This suggests that the pseudoautosomal region, where recombination occurs, comprises a large portion of the sex chromosomes of S. tropicalis. These results may in part explain why African clawed frogs have such a high incidence of polyploidization, shed light on why amphibians have a high rate of sex chromosome turnover, and raise questions about why homomorphic sex chromosomes are so prevalent in amphibians.

Indexed as

Evolution, MolecularAnimalsFemaleGene ExpressionGenotypeMaleSex ChromosomesXenopusAfrican clawed frogspseudoautosomal regionrecombinationsex chromosomesex determinationXenopus tropicalis

Identifiers

PMID23666865
PMCPMC3698919
OpenAlexW2119635059

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.