Evidence map›Paper›PMID 23666622›Full record

ArticleEukaryotic cell2013

The unfolded protein response in the protozoan parasite Toxoplasma gondii features translational and transcriptional control.

Bradley R Joyce, Zoi Tampaki, Kami Kim, Ronald C Wek, William J Sullivan

Open access · diamondAbstract read
In one paragraph

Article in Eukaryotic cell, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
2.8field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 61 citations in OpenAlex.

  1. Article
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  7. Glycosylation Analysis of Feline Small Intestine FollowingAnimals : an open access journal from MDPI · 2022
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  10. The determinants regulatingFrontiers in microbiology · 2022
    Review
  11. Review
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. An NADeLife · 2018
    Article
  19. A latent ability to persist: differentiation in Toxoplasma gondii.Cellular and molecular life sciences : CMLS · 2018
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Bradley R JoyceDepartment of Pharmacology & Toxicology, Indiana University School of Medicine, Indianapolis, Indiana, USA.
Zoi Tampaki
Kami Kim
Ronald C Wek
William J Sullivan
Indiana University School of MedicineAlbert Einstein College of Medicine · US

Funding

Metabolic stress responses andeIF2 kinase GCN2R01GM049164 · NIGMS · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI WEK, RONALD C · 1998 to 2019
$6.3M
A Systems Biology Approach to the Model Apicomplexan Toxoplasma gondiiRC4AI092801 · NIAID · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI KIM, KAMI, SULLIVAN, WILLIAM J · 2010 to 2010
$5.6M
Toxoplasma Epigenomics and Gene ExpressionR01AI087625 · NIAID · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI KIM, KAMI · 2010 to 2014
$3.5M
GCN5-mediated transcription in AIDS pathogen ToxoplasmaR01AI077502 · NIAID · INDIANA UNIVERSITY INDIANAPOLIS · PI SULLIVAN, WILLIAM J · 2009 to 2013
$1.8M
Translational control and latent Toxoplasma infectionR21AI084031 · NIAID · INDIANA UNIVERSITY INDIANAPOLIS · PI SULLIVAN, WILLIAM J, WEK, RONALD C · 2009 to 2010
$422k
Stress responses in the AIDS opportunistic parasite Toxoplasma gondiiF32AI093271 · NIAID · INDIANA UNIVERSITY INDIANAPOLIS · PI JOYCE, BRAD R · 2011 to 2012
$112k
NIAID NIH HHS F32 AI093271NIAID NIH HHS R01 AI077502NIAID NIH HHS R01 AI087625NIAID NIH HHS R21 AI084031NIAID NIH HHS RC4 AI092801NIAID NIH HHS RC4AI092801NIGMS NIH HHS R01 GM049164
6 · The paper itself

Abstract

The unfolded protein response (UPR) is an important regulatory network that responds to perturbations in protein homeostasis in the endoplasmic reticulum (ER). In mammalian cells, the UPR features translational and transcriptional mechanisms of gene expression aimed at restoring proteostatic control. A central feature of the UPR is phosphorylation of the α subunit of eukaryotic initiation factor-2 (eIF2) by PERK (EIF2AK3/PEK), which reduces the influx of nascent proteins into the ER by lowering global protein synthesis, coincident with preferential translation of key transcription activators of genes that function to expand the processing capacity of this secretory organelle. Upon ER stress, the apicomplexan parasite Toxoplasma gondii is known to induce phosphorylation of Toxoplasma eIF2α and lower translation initiation. To characterize the nature of the ensuing UPR in this parasite, we carried out microarray analyses to measure the changes in the transcriptome and in translational control during ER stress. We determined that a collection of transcripts linked with the secretory process are induced in response to ER stress, supporting the idea that a transcriptional induction phase of the UPR occurs in Toxoplasma. Furthermore, we determined that about 500 gene transcripts showed enhanced association with translating ribosomes during ER stress. Many of these target genes are suggested to be involved in gene expression, including JmjC5, which continues to be actively translated during ER stress. This study indicates that Toxoplasma triggers a UPR during ER stress that features both translational and transcriptional regulatory mechanisms, which is likely to be important for parasite invasion and development.

Indexed as

Gene Expression RegulationTranscription, GeneticAnimalsBase SequenceComputational BiologyeIF-2 KinaseEndoplasmic Reticulum StressJumonji Domain-Containing Histone DemethylasesMolecular Sequence DataParasitesPolyribosomesProtein BiosynthesisProtein Structure, TertiaryProtozoan ProteinsRNA, MessengerToxoplasmaeIF-2 KinaseJumonji Domain-Containing Histone DemethylasesProtozoan ProteinsRNA, MessengerTunicamycin

Identifiers

PMID23666622
PMCPMC3697469
OpenAlexW2112575752

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.