Evidence map›Paper›PMID 23666596›Full record

ArticleCellular & molecular biology letters2013

Identification of a non-canonical nuclear localization signal (NLS) in BRCA1 that could mediate nuclear localization of splice variants lacking the classical NLS.

Aruna Korlimarla, Lekhana Bhandary, Jyothi S Prabhu, Hema Shankar, Hari Sankaranarayanan, Pravin Kumar, Jose Remacle, Dipa Natarajan, T S Sridhar

Open access · goldAbstract read
In one paragraph

Article in Cellular & molecular biology letters, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Article
  3. DNA Repair Function Scores for 2172 Variants in the BRCA1 Amino-Terminus.bioRxiv : the preprint server for biology · 2023
    Article
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  11. Article
  12. Detection of a novel mutation in exon 20 of the BRCA1 gene.Cellular & molecular biology letters · 2013
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Aruna KorlimarlaDivision of Molecular Medicine, St. John's Research Institute (SJRI), Bangalore, India. aruna@sjri.res.in
Lekhana Bhandary
Jyothi S Prabhu
Hema Shankar
Hari Sankaranarayanan
Pravin Kumar
Jose Remacle
Dipa Natarajan
T S Sridhar
St. John's University · USSt. John's National Academy of Health Sciences · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The breast cancer type 1 susceptibility gene (BRCA1) is a tumor suppressor gene, mutations or loss of which lead to genomic instability and breast cancer. BRCA1 protein is part of a large multi-protein complex involved in a variety of DNA repair and transcription regulatory functions. At least four splice variants have been described and these differ in their function and tissue and spatio-temporal expression patterns. Structural analysis has revealed the presence of two nuclear localization signals (NLS) located in exon 11 of BRCA1. Interestingly, a splice variant of the protein that lacks both of the known NLS still manages to gain entry to the nucleus. While there is experimental proof for the translocation of these proteins by binding to other established nuclear proteins, we examined the possibility of a hitherto unidentified NLS in this particular variant. In this paper, we present evidence for the existence of a previously unreported non-canonical NLS contained within the first 39 amino acids of exon 11. A fusion protein with this 39mer and a reporter green fluorescent protein translocated into the nucleus when it was expressed in breast epithelial cells. We demonstrate the presence of a hitherto unreported noncanonical NLS in exon 11a of BRCA1. This NLS might aid proteins that were encoded by splice variants and lack the canonical NLS to localize to the nucleus.

Indexed as

Alternative SplicingAmino Acid SequenceBRCA1 ProteinCell Line, TumorCell NucleusExonsGreen Fluorescent ProteinsHumansMolecular Sequence DataNuclear Localization SignalsProtein TransportRecombinant Fusion ProteinsStructure-Activity RelationshipBRCA1 ProteinGreen Fluorescent ProteinsNuclear Localization SignalsRecombinant Fusion Proteins

Identifiers

PMID23666596
PMCPMC6275570
OpenAlexW2013551271

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.