Evidence map›Paper›PMID 23665474›Full record

ArticleDevelopmental biology2013

A distant, cis-acting enhancer drives induction of Arf by Tgfβ in the developing eye.

Yanbin Zheng, Caitlin Devitt, Jing Liu, Jie Mei, Stephen X Skapek

Abstract read
In one paragraph

Article in Developmental biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Modeling complex age-related eye disease.Progress in retinal and eye research · 2024
    Review
  2. Article
  3. Methyltransferase Inhibition Enables TgfMolecular and cellular biology · 2023
    Article
  4. Review
  5. Article
  6. Review
  7. Transcriptional regulation of INK4/ARF locus by cis and trans mechanisms.Frontiers in cell and developmental biology · 2022
    Review
  8. Article
  9. Article
  10. Identification ofMolecular cancer research : MCR · 2019
    Article
  11. Article
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Yanbin ZhengDivision of Hematology-Oncology, Department of Pediatrics, The University of Texas Southwestern Medical Center, 5323 Harry Hines Blvd. MC 9063, Dallas, TX 75390, USA.
Caitlin Devitt
Jing Liu
Jie Mei
Stephen X Skapek

Funding

UT Southwestern Medical Center Simmons Comprehensive Cancer CenterP30CA142543 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI MELANIE H. COBB · 2010 to 2026
$53.7M
ARF Controls Vascular Regression During Eye DevelopmentR01EY014368 · NEI · UT SOUTHWESTERN MEDICAL CENTER · PI SKAPEK, STEPHEN X · 2003 to 2012
$3.4M
Tgf Beta 2 controls p19Arf During Eye DevelopmentR01EY019942 · NEI · UT SOUTHWESTERN MEDICAL CENTER · PI SKAPEK, STEPHEN X · 2010 to 2017
$2.6M
NCI NIH HHS P30 CA142543NEI NIH HHS EY014368NEI NIH HHS EY019942NEI NIH HHS R01 EY014368NEI NIH HHS R01 EY019942
6 · The paper itself

Abstract

The Arf tumor suppressor represents one of several genes encoded at the Cdkn2a and Cdkn2b loci in the mouse. Beyond its role blunting the growth of incipient cancer cells, the Arf gene also plays an essential role in development: its gene product, p19(Arf), is induced by Tgfβ2 in the developing eye to dampen proliferative signals from Pdgfrβ, which effect ultimately fosters the vascular remodeling required for normal vision in the mouse. Mechanisms underlying Arf induction by Tgfβ2 are not fully understood. Using the chr4(Δ70 kb/Δ70 kb) mouse, we now show that deletion of the coronary artery disease (CAD) risk interval lying upstream of the Cdkn2a/b locus represses developmentally-timed induction of Arf resulting in eye disease mimicking the persistent hyperplastic primary vitreous (PHPV) found in Arf-null mice and in children. Using mouse embryo fibroblasts, we demonstrate that Arf induction by Tgfβ is blocked in cis to the 70 kb deletion, but Arf induction by activated RAS and cell culture "shock" is not. Finally, we show that Arf induction by Tgfβ is derailed by preventing RNA polymerase II recruitment following Smad 2/3 binding to the promoter. These findings provide the first evidence that the CAD risk interval, located at a distance from Arf, acts as a cis enhancer of Tgfβ2-driven induction of Arf during development.

Indexed as

Enhancer Elements, GeneticGene Expression Regulation, DevelopmentalADP-Ribosylation Factor 1AnimalsCoronary Artery DiseaseDisease Models, AnimalDNA, IntergenicEyeEye DiseasesFibroblastsGene DeletionMiceMice, TransgenicPersistent Hyperplastic Primary VitreousPhenotypeReceptor, Platelet-Derived Growth Factor betaADP-Ribosylation Factor 1DNA, IntergenicReceptor, Platelet-Derived Growth Factor betaTransforming Growth Factor beta

Identifiers

PMID23665474
PMCPMC4336776

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.