Evidence map›Paper›PMID 23665145›Full record

ArticleMolecular and biochemical parasitology2013

Crystal structures of Plasmodium falciparum cytosolic tryptophanyl-tRNA synthetase and its potential as a target for structure-guided drug design.

Cho Yeow Koh, Jessica E Kim, Alberto J Napoli, Christophe L M J Verlinde, Erkang Fan, Frederick S Buckner, Wesley C Van Voorhis, Wim G J Hol

Abstract read
In one paragraph

Article in Molecular and biochemical parasitology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. MalDA, Accelerating Malaria Drug Discovery.Trends in parasitology · 2021
    Review
  5. Antimalarial Properties of Isoquinoline Derivative fromBioMed research international · 2020
    Article
  6. Conformational heterogeneity in apo and drug-bound structures of Toxoplasma gondii prolyl-tRNA synthetase.Acta crystallographica. Section F, Structural biology communications · 2019
    Article
  7. Article
  8. Inverse docking based screening and identification of protein targets for Cassiarin alkaloids againstSaudi pharmaceutical journal : SPJ : the official publication of the Saudi Pharmaceutical Society · 2018
    Article
  9. Review
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Aminoacyl-tRNA synthetases as drug targets in eukaryotic parasites.International journal for parasitology. Drugs and drug resistance · 2014
    Review
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Cho Yeow KohDepartment of Biochemistry, University of Washington, Seattle, Washington 98195, USA.
Jessica E Kim
Alberto J Napoli
Christophe L M J Verlinde
Erkang Fan
Frederick S Buckner
Wesley C Van Voorhis
Wim G J Hol
University of Washington · US

Funding

Target Selection and Ligand DiscoveryP01AI067921 · NIAID · UNIVERSITY OF WASHINGTON · PI HOL, WILHELMUS G. J. · 2006 to 2008
$6.7M
Selective inhibition of tRNA synthetases from pathogenic protozoaR01AI084004 · NIAID · UNIVERSITY OF WASHINGTON · PI HOL, WILHELMUS G. J. · 2010 to 2014
$3.3M
Structures and selective inhibition of tRNA synthetases from pathogenic protozoaR56AI084004 · NIAID · UNIVERSITY OF WASHINGTON · PI HOL, WILHELMUS G. J. · 2009 to 2009
$732k
NIAID NIH HHS P01 AI067921NIAID NIH HHS P01AI067921NIAID NIH HHS R01 AI084004NIAID NIH HHS R01AI084004NIAID NIH HHS R56 AI084004NIAID NIH HHS R56AI084004
6 · The paper itself

Abstract

Malaria, most commonly caused by the parasite Plasmodium falciparum, is a devastating disease that remains a large global health burden. Lack of vaccines and drug resistance necessitate the continual development of new drugs and exploration of new drug targets. Due to their essential role in protein synthesis, aminoacyl-tRNA synthetases are potential anti-malaria drug targets. Here we report the crystal structures of P. falciparum cytosolic tryptophanyl-tRNA synthetase (Pf-cTrpRS) in its ligand-free state and tryptophanyl-adenylate (WAMP)-bound state at 2.34 Å and 2.40 Å resolutions, respectively. Large conformational changes are observed when the ligand-free protein is bound to WAMP. Multiple residues, completely surrounding the active site pocket, collapse onto WAMP. Comparison of the structures to those of human cytosolic TrpRS (Hs-cTrpRS) provides information about the possibility of targeting Pf-cTrpRS for inhibitor development. There is a high degree of similarity between Pf-cTrpRS and Hs-cTrpRS within the active site. However, the large motion that Pf-cTrpRS undergoes during transitions between different functional states avails an opportunity to arrive at compounds which selectively perturb the motion, and may provide a starting point for the development of new anti-malaria therapeutics.

Indexed as

Adenosine MonophosphateAmino Acid SequenceAntimalarialsCrystallography, X-RayDrug DesignModels, MolecularMolecular Sequence DataPlasmodium falciparumProtein BindingProtein ConformationSequence AlignmentTryptophanTryptophan-tRNA LigaseAdenosine MonophosphateAntimalarialsTryptophanTryptophan-tRNA Ligasetryptophyl adenylate

Identifiers

PMID23665145
PMCPMC3680109
OpenAlexW2031259765

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.