Evidence map›Paper›PMID 23663436›Full record

ArticleBMC genomics2013

Transcription profile of soybean-root-knot nematode interaction reveals a key role of phythormones in the resistance reaction.

Magda Aparecida Beneventi, Orzenil Bonfim da Silva, Maria Eugênia Lisei de Sá, Alexandre Augusto Pereira Firmino, Regina Maria Santos de Amorim, Erika Valéria Saliba Albuquerque, Maria Cristina Mattar da Silva, Joseane Padilha da Silva, Magnólia de Araújo Campos, Marcus José Conceição Lopes and 3 more

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
9.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 75 citations in OpenAlex.

  1. Article
  2. Review
  3. Comparative effect of gibberellic acid and brassinolide for mitigating drought stress in pea (Physiology and molecular biology of plants : an international journal of functional plant biology · 2025
    Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Review
  9. RNA-Seq of Cyst Nematode Infestation of Potato (Plants (Basel, Switzerland) · 2022
    Article
  10. Article
  11. WI12Plant biotechnology journal · 2022
    Article
  12. Review
  13. Article
  14. Article
  15. Genome-wide association study for resistance to the Meloidogyne javanica causing root-knot nematode in soybean.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021
    Article
  16. Article
  17. Review
  18. Review
  19. Article
  20. Genomics of Plant Disease Resistance in Legumes.Frontiers in plant science · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 1 country.

Magda Aparecida BeneventiFederal University of Rio Grande do Sul, Porto Alegre, RS 91501-970, Brazil.
Orzenil Bonfim da Silva
Maria Eugênia Lisei de Sá
Alexandre Augusto Pereira Firmino
Regina Maria Santos de Amorim
Erika Valéria Saliba Albuquerque
Maria Cristina Mattar da Silva
Joseane Padilha da Silva
Magnólia de Araújo Campos
Marcus José Conceição Lopes
Roberto Coiti Togawa
Georgios Joanis Pappas
Maria Fatima Grossi-de-Sa
Brazilian Agricultural Research Corporation · BRUniversidade Federal de Campina Grande · BRUniversidade Católica de Brasília · BRUniversidade de Brasília · BRUniversidade de Uberaba · BRUniversidade Federal do Rio Grande do Sul · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundRoot-knot nematodes (RKN- Meloidogyne genus) present extensive challenges to soybean crop. The soybean line (PI 595099) is known to be resistant against specific strains and races of nematode species, thus its differential gene expression analysis can lead to a comprehensive gene expression profiling in the incompatible soybean-RKN interaction. Even though many disease resistance genes have been studied, little has been reported about phytohormone crosstalk on modulation of ROS signaling during soybean-RKN interaction.

resultsUsing 454 technology to explore the common aspects of resistance reaction during both parasitism and resistance phases it was verified that hormone, carbohydrate metabolism and stress related genes were consistently expressed at high levels in infected roots as compared to mock control. Most noteworthy genes include those encoding glycosyltransferases, peroxidases, auxin-responsive proteins and gibberellin-regulated genes. Our data analysis suggests the key role of glycosyltransferases, auxins and components of gibberellin signal transduction, biosynthesis and deactivation pathways in the resistance reaction and their participation in jasmonate signaling and redox homeostasis in mediating aspects of plant growth and responses to biotic stress.

conclusionsBased on this study we suggest a reasonable model regarding to the complex mechanisms of crosstalk between plant hormones, mainly gibberellins and auxins, which can be crucial to modulate the levels of ROS in the resistance reaction to nematode invasion. The model also includes recent findings concerning to the participation of DELLA-like proteins and ROS signaling controlling plant immune or stress responses. Furthermore, this study provides a dataset of potential candidate genes involved in both nematode parasitism and resistance, which can be tested further for their role in this biological process using functional genomics approaches.

Indexed as

Gene Expression ProfilingHost-Parasite InteractionsAnimalsDisease ResistanceGibberellinsGlycine maxIndoleacetic AcidsPlant DiseasesPlant Growth RegulatorsPlant ProteinsRNA, MessengerSequence AnalysisStress, PhysiologicalTranscription, GeneticTylenchoideaGibberellinsIndoleacetic AcidsPlant Growth RegulatorsPlant ProteinsRNA, Messenger

Identifiers

PMID23663436
PMCPMC3701510
OpenAlexW2120959817

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.