Evidence map›Paper›PMID 23661805›Full record

ArticleJournal of the American Society of Nephrology : JASN2013

Mutation of the Mg2+ transporter SLC41A1 results in a nephronophthisis-like phenotype.

Toby W Hurd, Edgar A Otto, Eikan Mishima, Heon Yung Gee, Hana Inoue, Masato Inazu, Hideomi Yamada, Jan Halbritter, George Seki, Masato Konishi and 7 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of the American Society of Nephrology : JASN, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
4.6field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 70 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Review
  5. Nephronophthisis: a pathological and genetic perspective.Pediatric nephrology (Berlin, Germany) · 2024
    Review
  6. Article
  7. Genetic and molecular mechanisms of hydrocephalus.Frontiers in molecular neuroscience · 2024
    Review
  8. Review
  9. Review
  10. Article
  11. Review
  12. Article
  13. Review
  14. Renal Ciliopathies: Sorting Out Therapeutic Approaches for Nephronophthisis.Frontiers in cell and developmental biology · 2021
    Review
  15. NaCl cotransporter activity and MgAmerican journal of physiology. Renal physiology · 2020
    Review
  16. Article
  17. Article
  18. SLC41A1 is essential for magnesium homeostasis in vivo.Pflugers Archiv : European journal of physiology · 2019
    Article
  19. Swimming with the fishes: delineating tubular transport pathways for magnesium.Pflugers Archiv : European journal of physiology · 2019
    Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors at 8 institutions in 4 countries.

Toby W HurdUniversity of Edinburgh, Edinburgh, UK.
Edgar A Otto
Eikan Mishima
Heon Yung Gee
Hana Inoue
Masato Inazu
Hideomi Yamada
Jan Halbritter
George Seki
Masato Konishi
Weibin Zhou
Tsutomo Yamane
Satoshi Murakami
Gianluca Caridi
Gianmarco Ghiggeri
Takaaki Abe
Friedhelm Hildebrandt
Pediatrics and Genetics · USIstituto Giannina Gaslini · ITThe University of Tokyo · JPTohoku University · JPMRC Institute of Genetics and Molecular Medicine · GBTokyo Institute of Technology · JPTokyo Medical University · JPYokohama City University · JP

Funding

Novel genetics, pathobiology & therapy of nephronophthisis-related ciliopathiesR01DK068306 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI HILDEBRANDT, FRIEDHELM · 2004 to 2022
$6.6M
Functional characterization of the gene NPHP4R01DK064614 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI HILDEBRANDT, FRIEDHELM · 2004 to 2007
$1.3M
Identifying all Meckel-like ciliopathy genes by established total exome capture aRC4DK090917 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI OTTO, EDGAR A · 2010 to 2010
$1.2M
Mesonephric Model of Podocyte Injury and RegenerationR00DK091405 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ZHOU, WEIBIN · 2013 to 2015
$730k
Mesonephric Model of Podocyte Injury and RegenerationK99DK091405 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ZHOU, WEIBIN · 2011 to 2012
$178k
Howard Hughes Medical InstituteNIDDK NIH HHS DK064614NIDDK NIH HHS DK090917NIDDK NIH HHS DK091405NIDDK NIH HHS DK1068306NIDDK NIH HHS DK1069274NIDDK NIH HHS K99 DK091405NIDDK NIH HHS R00 DK091405NIDDK NIH HHS R01 DK064614NIDDK NIH HHS R01 DK068306NIDDK NIH HHS RC4 DK090917
6 · The paper itself

Abstract

Nephronophthisis (NPHP)-related ciliopathies are recessive, single-gene disorders that collectively make up the most common genetic cause of CKD in the first three decades of life. Mutations in 1 of the 15 known NPHP genes explain less than half of all cases with this phenotype, however, and the recently identified genetic causes are exceedingly rare. As a result, a strategy to identify single-gene causes of NPHP-related ciliopathies in single affected families is needed. Although whole-exome resequencing facilitates the identification of disease genes, the large number of detected genetic variants hampers its use. Here, we overcome this limitation by combining homozygosity mapping with whole-exome resequencing in a sibling pair with an NPHP-related ciliopathy. Whole-exome capture revealed a homozygous splice acceptor site mutation (c.698G>T) in the renal Mg(2+) transporter SLC41A1. This mutation resulted in skipping of exon 6 of SLC41A1, resulting in an in-frame deletion of a transmembrane helix. Transfection of cells with wild-type or mutant SLC41A1 revealed that deletion of exon 6 completely blocks the Mg(2+) transport function of SLC41A1. Furthermore, in normal human kidney tissue, endogenous SLC41A1 specifically localized to renal tubules situated at the corticomedullary boundary, consistent with the region of cystogenesis observed in NPHP and related ciliopathies. Last, morpholino-mediated knockdown of slc41a1 expression in zebrafish resulted in ventral body curvature, hydrocephalus, and cystic kidneys, similar to the effects of knocking down other NPHP genes. Taken together, these data suggest that defects in the maintenance of renal Mg(2+) homeostasis may lead to tubular defects that result in a phenotype similar to NPHP.

Indexed as

AnimalsCation Transport ProteinsChildChild, PreschoolDogsExonsFemaleGenes, RecessiveHEK293 CellsHeterozygoteHomozygoteHumansKidneyKidney Diseases, CysticMadin Darby Canine Kidney CellsMagnesiumCation Transport ProteinsMagnesiumMembrane ProteinsSLC41A1 protein, humanSLC41A1 protein, zebrafishZebrafish Proteins

Identifiers

PMID23661805
PMCPMC3665398
OpenAlexW2033951976

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.