ArticleDatabase : the journal of biological databases and curation2013
RiceSRTFDB: a database of rice transcription factors containing comprehensive expression, cis-regulatory element and mutant information to facilitate gene function analysis.
Article in Database : the journal of biological databases and curation, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.
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Who cites it
26 citing papers in PubMed, 83 citations in OpenAlex.
- Plant Signaling Hormones and Transcription Factors: Key Regulators of Plant Responses to Growth, Development, and Stress.Plants (Basel, Switzerland) · 2025Review
- Characterization and expression analysis of transcription factors inFrontiers in plant science · 2025Article
- Multifaceted roles of transcription factors during plant embryogenesis.Frontiers in plant science · 2023Review
- NetREx: Network-based Rice Expression Analysis Server for abiotic stress conditions.Database : the journal of biological databases and curation · 2022Article
- Expression Profile of Sorghum Genes andPlants (Basel, Switzerland) · 2022Article
- Global Integrated Genomic and Transcriptomic Analyses of MYB Transcription Factor Superfamily in C3 Model PlantFrontiers in genetics · 2022Article
- Using Network-Based Machine Learning to Predict Transcription Factors Involved in Drought Resistance.Frontiers in genetics · 2021Article
- Bioinformatics Resources for Plant Abiotic Stress Responses: State of the Art and Opportunities in the Fast Evolving -Omics Era.Plants (Basel, Switzerland) · 2020Review
- Dynamics of Global Gene Expression and Regulatory Elements in Growing Brachypodium Root System.Scientific reports · 2020Article
- Transcriptomic data-driven discovery of global regulatory features of rice seeds developing under heat stress.Computational and structural biotechnology journal · 2020Article
- Genome-Wide Computational Identification of Biologically Significant Cis-Regulatory Elements and Associated Transcription Factors from Rice.Plants (Basel, Switzerland) · 2019Article
- RNASeq analysis of giant cane reveals the leaf transcriptome dynamics under long-term salt stress.BMC plant biology · 2019Article
- Infrastructures of systems biology that facilitate functional genomic study in rice.Rice (New York, N.Y.) · 2019Review
- A web-based tool for the prediction of rice transcription factor function.Database : the journal of biological databases and curation · 2019Article
- Plant stress RNA-seq Nexus: a stress-specific transcriptome database in plant cells.BMC genomics · 2018Article
- Augmentation of crop productivity through interventions of omics technologies in India: challenges and opportunities.3 Biotech · 2018Review
- Draft genome sequence of first monocot-halophytic species Oryza coarctata reveals stress-specific genes.Scientific reports · 2018Article
- Analysis of Genes with Alternatively Spliced Transcripts in the Leaf, Root, Panicle and Seed of Rice Using a Long Oligomer Microarray and RNA-Seq.Molecules and cells · 2017Article
- RiceMetaSys for salt and drought stress responsive genes in rice: a web interface for crop improvement.BMC bioinformatics · 2017Article
- Rice Improvement Through Genome-Based Functional Analysis and Molecular Breeding in India.Rice (New York, N.Y.) · 2016Article
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Authors and funding
2 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Rice is one of the most important crop plants, representing the staple food for more than half the world's population. However, its productivity is challenged by various stresses, including drought and salinity. Transcription factors (TFs) represent a regulatory component of the genome and are the most important targets for engineering stress tolerance. Here, we constructed a database, RiceSRTFDB, which provides comprehensive expression information for rice TFs during drought and salinity stress conditions and various stages of development. This information will be useful to identify the target TF(s) involved in stress response at a particular stage of development. The curated information for cis-regulatory elements present in their promoters has also been provided, which will be important to study the binding proteins. In addition, we have provided the available mutants and their phenotype information for rice TFs. All these information have been integrated in the database to facilitate the selection of target TFs of interest for functional analysis. This database aims to accelerate functional genomics research of rice TFs and understand the regulatory mechanisms underlying abiotic stress responses. Database URL: http://www.nipgr.res.in/RiceSRTFDB.html
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.