Evidence map›Paper›PMID 23658631›Full record

ArticlePloS one2013

MabsBase: a Mycobacterium abscessus genome and annotation database.

Hamed Heydari, Wei Yee Wee, Naline Lokanathan, Ranjeev Hari, Aini Mohamed Yusoff, Ching Yew Beh, Amir Hessam Yazdi, Guat Jah Wong, Yun Fong Ngeow, Siew Woh Choo

Erratum issuedAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

  1. Article
  2. Article
  3. Potential therapeutic targets fromRSC medicinal chemistry · 2022
    Review
  4. Article
  5. High-Throughput Screen for Cell Wall Synthesis Network Module inFrontiers in bioengineering and biotechnology · 2020
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Mycobacterium abscessus Complex Infections in Humans.Emerging infectious diseases · 2015
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. FusoBase: an online Fusobacterium comparative genomic analysis platform.Database : the journal of biological databases and curation · 2014
    Article
  19. Article
  20. Phylogenomics of Brazilian epidemic isolates of Mycobacterium abscessus subsp. bolletii reveals relationships of global outbreak strains.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2013
    Article
4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

10 authors.

Hamed HeydariDental Research and Training Unit, Faculty of Dentistry, University of Malaya, Kuala Lumpur, Malaysia.
Wei Yee Wee
Naline Lokanathan
Ranjeev Hari
Aini Mohamed Yusoff
Ching Yew Beh
Amir Hessam Yazdi
Guat Jah Wong
Yun Fong Ngeow
Siew Woh Choo

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

summaryMycobacterium abscessus is a rapidly growing non-tuberculous mycobacterial species that has been associated with a wide spectrum of human infections. As the classification and biology of this organism is still not well understood, comparative genomic analysis on members of this species may provide further insights on their taxonomy, phylogeny, pathogenicity and other information that may contribute to better management of infections. The MabsBase described in this paper is a user-friendly database providing access to whole-genome sequences of newly discovered M. abscessus strains as well as resources for whole-genome annotations and computational predictions, to support the expanding scientific community interested in M. abscessus research. The MabsBase is freely available at http://mabscessus.um.edu.my.

Indexed as

Databases, GeneticGenome, BacterialMolecular Sequence AnnotationPolymorphism, Single NucleotideHumansMycobacterium Infections, NontuberculousNontuberculous MycobacteriaPhylogenySequence Analysis, DNA

Identifiers

PMID23658631
PMCPMC3639173

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.