Evidence map›Paper›PMID 23658530›Full record

ArticlePLoS genetics2013

Female bias in Rhox6 and 9 regulation by the histone demethylase KDM6A.

Joel B Berletch, Xinxian Deng, Di Kim Nguyen, Christine M Disteche

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 58 citations in OpenAlex.

  1. Article
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  16. RNAi-mediated knockdown ofOncotarget · 2017
    Article
  17. Article
  18. A general theory of sexual differentiation.Journal of neuroscience research · 2017
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Joel B BerletchDepartment of Pathology, School of Medicine, University of Washington, Seattle, Washington, United States of America.
Xinxian Deng
Di Kim Nguyen
Christine M Disteche
University of Washington · US

Funding

Mouse X InactivationR01GM046883 · NIGMS · UNIVERSITY OF WASHINGTON · PI DISTECHE, CHRISTINE M. · 1992 to 2018
$5.9M
Role of UTX in escape from X inactivationF32HD060402 · NICHD · UNIVERSITY OF WASHINGTON · PI BERLETCH, JOEL BRADFORD · 2009 to 2010
$68k
NICHD NIH HHS F32 HD060402NICHD NIH HHS HD060402NIGMS NIH HHS GM046883NIGMS NIH HHS R01 GM046883
6 · The paper itself

Abstract

The Rhox cluster on the mouse X chromosome contains reproduction-related homeobox genes expressed in a sexually dimorphic manner. We report that two members of the Rhox cluster, Rhox6 and 9, are regulated by de-methylation of histone H3 at lysine 27 by KDM6A, a histone demethylase with female-biased expression. Consistent with other homeobox genes, Rhox6 and 9 are in bivalent domains prior to embryonic stem cell differentiation and thus poised for activation. In female mouse ES cells, KDM6A is specifically recruited to Rhox6 and 9 for gene activation, a process inhibited by Kdm6a knockdown in a dose-dependent manner. In contrast, KDM6A occupancy at Rhox6 and 9 is low in male ES cells and knockdown has no effect on expression. In mouse ovary where Rhox6 and 9 remain highly expressed, KDM6A occupancy strongly correlates with expression. Our study implicates Kdm6a, a gene that escapes X inactivation, in the regulation of genes important in reproduction, suggesting that KDM6A may play a role in the etiology of developmental and reproduction-related effects of X chromosome anomalies.

Indexed as

AnimalsDNA MethylationEmbryonic Stem CellsFemaleGene Expression Regulation, DevelopmentalHistone DemethylasesHomeodomain ProteinsJumonji Domain-Containing Histone DemethylasesMiceReproductionSex CharacteristicsX Chromosome InactivationHistone DemethylasesHomeodomain ProteinsJumonji Domain-Containing Histone DemethylasesKdm6b protein, mouseRhox6 protein, mouseUtx protein, mouse

Identifiers

PMID23658530
PMCPMC3642083
OpenAlexW2081956379

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.