Evidence map›Paper›PMID 23658229›Full record

ArticleNucleic acids research2013

Red5 and three nuclear pore components are essential for efficient suppression of specific mRNAs during vegetative growth of fission yeast.

Tomoyasu Sugiyama, Nobuyoshi Wanatabe, Eri Kitahata, Tokio Tani, Rie Sugioka-Sugiyama

Abstract read
In one paragraph

Article in Nucleic acids research, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Tomoyasu SugiyamaUniversity of Tsukuba, Tsukuba, Ibaraki, 305-8577, Japan. sugiyamt@tara.tsukuba.ac.jp
Nobuyoshi Wanatabe
Eri Kitahata
Tokio Tani
Rie Sugioka-Sugiyama

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Zinc-finger domains are found in many nucleic acid-binding proteins in both prokaryotes and eukaryotes. Proteins carrying zinc-finger domains have important roles in various nuclear transactions, including transcription, mRNA processing and mRNA export; however, for many individual zinc-finger proteins in eukaryotes, the exact function of the protein is not fully understood. Here, we report that Red5 is involved in efficient suppression of specific mRNAs during vegetative growth of Schizosaccharomyces pombe. Red5, which contains five C3H1-type zinc-finger domains, localizes to the nucleus where it forms discrete dots. A red5 point mutation, red5-2, results in the upregulation of specific meiotic mRNAs in vegetative mutant red5-2 cells; northern blot data indicated that these meiotic mRNAs in red5-2 cells have elongated poly(A) tails. RNA-fluorescence in situ hybridization results demonstrate that poly(A)(+) RNA species accumulate in the nucleolar regions of red5-deficient cells. Moreover, Red5 genetically interacts with several mRNA export factors. Unexpectedly, three components of the nuclear pore complex also suppress a specific set of meiotic mRNAs. These results indicate that Red5 function is important to meiotic mRNA degradation; they also suggest possible connections among selective mRNA decay, mRNA export and the nuclear pore complex in vegetative fission yeast.

Indexed as

RNA StabilityCarrier ProteinsCell NucleolusCell NucleusDNA DamageMeiosisMitosisMutationNuclear Pore Complex ProteinsPheromonesPoly(A)-Binding ProteinsProtein Structure, TertiaryRNA, MessengerSchizosaccharomycesSchizosaccharomyces pombe ProteinsSpores, FungalCarrier ProteinsNuclear Pore Complex ProteinsPab2 protein, S pombePheromonesPoly(A)-Binding ProteinsRed5 protein, S pombeRNA, MessengerSchizosaccharomyces pombe ProteinsTubulin Modulators

Identifiers

PMID23658229
PMCPMC3711435

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.