Evidence map›Paper›PMID 23656496›Full record

ArticleJournal of proteome research2013

Genomic and proteomic dissection of the ubiquitous plant pathogen, Armillaria mellea: toward a new infection model system.

Cassandra Collins, Thomas M Keane, Daniel J Turner, Grainne O'Keeffe, David A Fitzpatrick, Sean Doyle

Abstract read
In one paragraph

Article in Journal of proteome research, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed.

  1. Biology · 2026
    Review
  2. Proteomic and Secretomic Response of an AfricanJournal of proteome research · 2026
    Article
  3. Aerolysin-like proteins fromFrontiers in fungal biology · 2026
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  9. Journal of fungi (Basel, Switzerland) · 2023
    Review
  10. Article
  11. Article
  12. Effects of LPS fromMicroorganisms · 2023
    Article
  13. Article
  14. Article
  15. Article
  16. Effect of symbiotic fungi-Frontiers in microbiology · 2023
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Cassandra CollinsDepartment of Biology, National University of Ireland Maynooth, Maynooth, Co Kildare, Ireland.
Thomas M Keane
Daniel J Turner
Grainne O'Keeffe
David A Fitzpatrick
Sean Doyle

Funding

Wellcome Trust
6 · The paper itself

Abstract

Armillaria mellea is a major plant pathogen. Yet, no large-scale "-omics" data are available to enable new studies, and limited experimental models are available to investigate basidiomycete pathogenicity. Here we reveal that the A. mellea genome comprises 58.35 Mb, contains 14473 gene models, of average length 1575 bp (4.72 introns/gene). Tandem mass spectrometry identified 921 mycelial (n = 629 unique) and secreted (n = 183 unique) proteins. Almost 100 mycelial proteins were either species-specific or previously unidentified at the protein level. A number of proteins (n = 111) was detected in both mycelia and culture supernatant extracts. Signal sequence occurrence was 4-fold greater for secreted (50.2%) compared to mycelial (12%) proteins. Analyses revealed a rich reservoir of carbohydrate degrading enzymes, laccases, and lignin peroxidases in the A. mellea proteome, reminiscent of both basidiomycete and ascomycete glycodegradative arsenals. We discovered that A. mellea exhibits a specific killing effect against Candida albicans during coculture. Proteomic investigation of this interaction revealed the unique expression of defensive and potentially offensive A. mellea proteins (n = 30). Overall, our data reveal new insights into the origin of basidiomycete virulence and we present a new model system for further studies aimed at deciphering fungal pathogenic mechanisms.

Indexed as

Genome, FungalProteomicsAntibiosisArmillariaCandida albicansChromatography, LiquidFungal ProteinsGenome SizeLaccaseMyceliumPeroxidasesPhylogenyPlantsSpecies SpecificityTandem Mass SpectrometryVirulenceFungal ProteinsLaccaselignin peroxidasePeroxidases

Identifiers

PMID23656496
PMCPMC3679558

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.