Evidence map›Paper›PMID 23653364›Full record

ArticleThe Journal of biological chemistry2013

Importance of a Lys113-Glu195 intermonomer ionic bond in F-actin stabilization and regulation by yeast formins Bni1p and Bnr1p.

Kuo-Kuang Wen, Melissa McKane, Peter A Rubenstein

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.4field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
  3. Mutant vascular actin is a TAAD misbehaving.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Kuo-Kuang WenDepartment of Biochemistry, University of Iowa Roy J. and Lucille A. Carver College of Medicine, Iowa City, Iowa 52242, USA.
Melissa McKane
Peter A Rubenstein
University of Iowa · US

Funding

Biochemical consequences of Deafness-causing actin mutationsR01DC008803 · NIDCD · UNIVERSITY OF IOWA · PI RUBENSTEIN, PETER A. · 2008 to 2012
$1.8M
Biochemical Consequences of Deafness-causing Actin MutationsR55DC008803 · NIDCD · UNIVERSITY OF IOWA · PI RUBENSTEIN, PETER A. · 2007 to 2007
$100k
NIDCD NIH HHS DC8803NIDCD NIH HHS R01 DC008803NIDCD NIH HHS R55 DC008803
6 · The paper itself

Abstract

Proper actin cytoskeletal function requires actin's ability to generate a stable filament and requires that this reaction be regulated by actin-binding proteins via allosteric effects on the actin. A proposed ionic interaction in the actin filament interior between Lys(113) of one monomer and Glu(195) of a monomer in the apposing strand potentially fosters cross-strand stabilization and allosteric communication between the filament interior and exterior. We interrupted the potential interaction by creating either K113E or E195K actin. By combining the two, we also reversed the interaction with a K113E/E195K (E/K) mutant. In all cases, we isolated viable cells expressing only the mutant actin. Either single mutant cell displays significantly decreased growth in YPD medium. This deficit is rescued in the double mutant. All three mutants display abnormal phalloidin cytoskeletal staining. K113E actin exhibits a critical concentration of polymerization 4 times higher than WT actin, nucleates more poorly, and forms shorter filaments. Restoration of the ionic bond, E/K, eliminates most of these problems. E195K actin behaves much more like WT actin, indicating accommodation of the neighboring lysines. Both Bni1 and Bnr1 formin FH1-FH2 fragment accelerate polymerization of WT, E/K, and to a lesser extent E195K actin. Bni1p FH1-FH2 dramatically inhibits K113E actin polymerization, consistent with barbed end capping. However, Bnr1p FH1-FH2 restores K113E actin polymerization, forming single filaments. In summary, the proposed ionic interaction plays an important role in filament stabilization and in the propagation of allosteric changes affecting formin regulation in an isoform-specific fashion.

Indexed as

ActinsAllosteric SiteCircular DichroismCytoskeletal ProteinsCytoskeletonGene Expression Regulation, FungalGlutamic AcidLysineMicrofilament ProteinsMitochondriaModels, MolecularMutagenesis, Site-DirectedMutationProtein BindingSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsActinsBni1 protein, S cerevisiaeBNR1 protein, S cerevisiaeCytoskeletal ProteinsGlutamic AcidLysineMicrofilament ProteinsSaccharomyces cerevisiae ProteinsActinContractile ProteinCytoskeletonForminMutagenesis Site-specificPolymerizationYeast

Identifiers

PMID23653364
PMCPMC3696686
OpenAlexW2040641495

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.