Evidence map›Paper›PMID 23653354›Full record

ArticleThe Journal of biological chemistry2013

Structural analysis of collagen type I interactions with human fibronectin reveals a cooperative binding mode.

Michèle C Erat, Barbara Sladek, Iain D Campbell, Ioannis Vakonakis

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
6.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 63 citations in OpenAlex.

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  12. Breast cancer cells alter the dynamics of stromal fibronectin-collagen interactions.Matrix biology : journal of the International Society for Matrix Biology · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Michèle C EratDepartment of Biochemistry, University of Oxford, Oxford OX1 3QU, United Kingdom.
Barbara Sladek
Iain D Campbell
Ioannis Vakonakis
University of Oxford · GB

Funding

Biotechnology and Biological Sciences Research Council BB/J008265/1Medical Research Council G0900052Wellcome Trust 088497/Z/09/Z
6 · The paper itself

Abstract

Despite its biological importance, the interaction between fibronectin (FN) and collagen, two abundant and crucial tissue components, has not been well characterized on a structural level. Here, we analyzed the four interactions formed between epitopes of collagen type I and the collagen-binding fragment (gelatin-binding domain (GBD)) of human FN using solution NMR, fluorescence, and small angle x-ray scattering methods. Collagen association with FN modules (8-9)FnI occurs through a conserved structural mechanism but exhibits a 400-fold disparity in affinity between collagen sites. This disparity is reduced in the full-length GBD, as (6)FnI(1-2)FnII(7)FnI binds a specific collagen epitope next to the weakest (8-9)FnI-binding site. The cooperative engagement of all GBD modules with collagen results in four broadly equipotent FN-collagen interaction sites. Collagen association stabilizes a distinct monomeric GBD conformation in solution, giving further evidence to the view that FN fragments form well defined functional and structural units.

Indexed as

Amino Acid SequenceCollagen Type IFibronectinsHumansHydrophobic and Hydrophilic InteractionsModels, MolecularMolecular Sequence DataNuclear Magnetic Resonance, BiomolecularProtein BindingProtein Interaction Domains and MotifsProtein StabilityProtein Structure, QuaternaryProtein Structure, SecondarySolutionsTomography, X-Ray ComputedCollagen Type IFibronectinsSolutionsCollagenExtracellular Matrix ProteinsFibronectinGBDNMRSAXSX-ray Crystallography

Identifiers

PMID23653354
PMCPMC3682544
OpenAlexW2035802939

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.