Evidence map›Paper›PMID 23653353›Full record

ArticleThe Journal of biological chemistry2013

The mechanism by which a propeptide-encoded pH sensor regulates spatiotemporal activation of furin.

Danielle M Williamson, Johannes Elferich, Parvathy Ramakrishnan, Gary Thomas, Ujwal Shinde

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.6field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 25 citations in OpenAlex.

  1. Trial
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  7. SARS-CoV-2 and other human coronaviruses: Mapping of protease recognition sites, antigenic variation of spike protein and their grouping through molecular phylogenetics.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2021
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  18. Host cell entry of Middle East respiratory syndrome coronavirus after two-step, furin-mediated activation of the spike protein.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Danielle M WilliamsonDepartment of Biochemistry and Molecular Biology, Oregon Health and Science University, Portland Oregon 97239, USA.
Johannes Elferich
Parvathy Ramakrishnan
Gary Thomas
Ujwal Shinde
Oregon Health & Science University · USUniversity of Pittsburgh · US

Funding

Program in Molecular and Cellular BiosciencesT32GM071338 · NIGMS · OREGON HEALTH & SCIENCE UNIVERSITY · PI MASLEN, CHERYL L · 2005 to 2020
$3.5M
Regulation of TRAIL Induced Apoptosis in Cancer CellsR01CA151564 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI THOMAS, GARY · 2011 to 2015
$1.6M
Determinants of organelle-specific activation of Proprotein Convertase 1F30DK096752 · NIDDK · OREGON HEALTH & SCIENCE UNIVERSITY · PI WILLIAMSON, DANIELLE MARIE · 2013 to 2016
$188k
NCI NIH HHS CA151564NCI NIH HHS R01 CA151564NIDDK NIH HHS F30 DK096752NIGMS NIH HHS T32 GM071338
6 · The paper itself

Abstract

The proprotein convertase furin requires the pH gradient of the secretory pathway to regulate its multistep, compartment-specific autocatalytic activation. Although His-69 within the furin prodomain serves as the pH sensor that detects transport of the propeptide-enzyme complex to the trans-Golgi network, where it promotes cleavage and release of the inhibitory propeptide, a mechanistic understanding of how His-69 protonation mediates furin activation remains unclear. Here we employ biophysical, biochemical, and computational approaches to elucidate the mechanism underlying the pH-dependent activation of furin. Structural analyses and binding experiments comparing the wild-type furin propeptide with a nonprotonatable His-69 → Leu mutant that blocks furin activation in vivo revealed protonation of His-69 reduces both the thermodynamic stability of the propeptide as well as its affinity for furin at pH 6.0. Structural modeling combined with mathematical modeling and molecular dynamic simulations suggested that His-69 does not directly contribute to the propeptide-enzyme interface but, rather, triggers movement of a loop region in the propeptide that modulates access to the cleavage site and, thus, allows for the tight pH regulation of furin activation. Our work establishes a mechanism by which His-69 functions as a pH sensor that regulates compartment-specific furin activation and provides insights into how other convertases and proteases may regulate their precise spatiotemporal activation.

Indexed as

Circular DichroismEnzyme ActivationFurinGlycerolHistidineHumansHydrogen-Ion ConcentrationMolecular ChaperonesMolecular Dynamics SimulationPeptidesProtein FoldingProtonsThermodynamicsTime FactorsUreaFurinGlycerolHistidineMolecular ChaperonesPeptidesProtonsUreaConvertasesFurinIntramolecular ChaperonepH SensorPropeptideProtease Activation PrecisionProtein FoldingProtein SecretionSerine ProteaseSubcellular Organelles

Identifiers

PMID23653353
PMCPMC3696687
OpenAlexW1989031499

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.