Evidence map›Paper›PMID 23653196›Full record

ArticleNature communications2013

A novel mechanism for fine-tuning open-state stability in a voltage-gated potassium channel.

Stephan A Pless, Ana P Niciforovic, Jason D Galpin, John-Jose Nunez, Harley T Kurata, Christopher A Ahern

Abstract read
In one paragraph

Article in Nature communications, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Applications of sequence coevolution in membrane protein biochemistry.Biochimica et biophysica acta. Biomembranes · 2018
    Review
  3. A new mechanism of voltage-dependent gating exposed by KThe Journal of general physiology · 2017
    Article
  4. Atomic determinants of BK channel activation by polyunsaturated fatty acids.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Stephan A PlessDepartment of Anesthesiology, Pharmacology and Therapeutics, University of British Columbia, 2350 Health Science Mall, Vancouver, British Columbia, Canada V6T 1Z3.
Ana P Niciforovic
Jason D Galpin
John-Jose Nunez
Harley T Kurata
Christopher A Ahern

Funding

Synthetic Antigen Binder CoreU54GM087519 · NIGMS · UNIVERSITY OF CHICAGO · PI ZHOU, MING · 2010 to 2017
$31.9M
Chemical Biology of Voltage-Gated Sodium and Potassium ChannelsR01GM106569 · NIGMS · UNIVERSITY OF IOWA · PI AHERN, CHRISTOPHER A · 2013 to 2022
$2.7M
CIHR MOP-56858CIHR MOP-97998NIGMS NIH HHS GM087519NIGMS NIH HHS R01 GM106569NIGMS NIH HHS U54 GM087519
6 · The paper itself

Abstract

Voltage-gated potassium channels elicit membrane hyperpolarization through voltage-sensor domains that regulate the conductive status of the pore domain. To better understand the inherent basis for the open-closed equilibrium in these channels, we undertook an atomistic scan using synthetic fluorinated derivatives of aromatic residues previously implicated in the gating of Shaker potassium channels. Here we show that stepwise dispersion of the negative electrostatic surface potential of only one site, Phe481, stabilizes the channel open state. Furthermore, these data suggest that this apparent stabilization is the consequence of the amelioration of an inherently repulsive open-state interaction between the partial negative charge on the face of Phe481 and a highly co-evolved acidic side chain, Glu395, and this interaction is potentially modulated through the Tyr485 hydroxyl. We propose that the intrinsic open-state destabilization via aromatic repulsion represents a new mechanism by which ion channels, and likely other proteins, fine-tune conformational equilibria.

Indexed as

Ion Channel GatingAmino Acid SequenceAnimalsGlutamic AcidHalogenationKineticsModels, BiologicalModels, MolecularMolecular Sequence DataMutant ProteinsMutationPhenylalaninePotassium Channels, Voltage-GatedProtein BindingStatic ElectricityStatistics as TopicGlutamic AcidMutant ProteinsPhenylalaninePotassium Channels, Voltage-Gated

Identifiers

PMID23653196
PMCPMC3644096

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.