ArticlePlant cell reports2013
Transcriptome profiling reveals differential transcript abundance in response to chilling stress in Populus simonii.
Article in Plant cell reports, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.
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Who cites it
19 citing papers in PubMed, 48 citations in OpenAlex.
- Transcriptomics Profiling ofInternational journal of molecular sciences · 2022Article
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- Transcriptomic analysis reveals mechanism of light-sensitive albinism in tea plant Camellia sinensis 'Huangjinju'.BMC plant biology · 2020Article
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- The photo-inhibition of camphor leaves (PeerJ · 2020Article
- Transcriptomic changes in Cucurbita pepo fruit after cold storage: differential response between two cultivars contrasting in chilling sensitivity.BMC genomics · 2018Article
- Anther-preferential expressing gene PMR is essential for the mitosis of pollen development in rice.Plant cell reports · 2017Article
- Epigenetic map and genetic map basis of complex traits in cassava population.Scientific reports · 2017Article
- IbOr Regulates Photosynthesis under Heat Stress by Stabilizing IbPsbP in Sweetpotato.Frontiers in plant science · 2017Article
- Deep-sequencing transcriptome analysis of field-grown Medicago sativa L. crown buds acclimated to freezing stress.Functional & integrative genomics · 2016Article
- Hormonal control of cold stress responses in plants.Cellular and molecular life sciences : CMLS · 2016Review
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- The cold responsive mechanism of the paper mulberry: decreased photosynthesis capacity and increased starch accumulation.BMC genomics · 2015Article
- Transcriptional regulation of the paper mulberry under cold stress as revealed by a comprehensive analysis of transcription factors.BMC plant biology · 2015Article
- Article
- Transcriptome Profiles of Populus euphratica upon Heat Shock stress.Current genomics · 2014Article
- Comparison of the physiological effects and transcriptome responses of Populus simonii under different abiotic stresses.Plant molecular biology · 2014Article
- Effects of high temperature on photosynthesis and related gene expression in poplar.BMC plant biology · 2014Article
- Identification and characterization of nuclear genes involved in photosynthesis in Populus.BMC plant biology · 2014Article
Corrections and comments
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Authors and funding
4 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
key messageWe report global gene expression patterns of poplar in response to chilling stress. A total of 1,085 significantly differentially expressed genes, involved in photosynthesis, signal transduction, and regulation of transcription, were identified. To understand the gene network underlying the response to chilling stress in the poplar, Populus simonii, we determined the genome transcript expression profile using an Affymetrix GeneChip with 56,000 genes. Our results revealed 11,626 cold-responsive genes, with 5,267 upregulated and 6,359 downregulated. In terms of biological processes, gene ontology (GO) analysis indicated that cold-induced genes were enriched in response to temperature stimulus, reactive oxygen species, and hormone stimulus. GO terms including cellular nitrogen compound metabolic processes, photosynthesis, and generation of precursor metabolites and energy were enriched in the cold-repressed genes. The functional annotation of differentially expressed genes revealed genes involved in photosynthesis, calcium/calmodulin-mediated signal transduction, abscisic acid (ABA) homeostasis and transport, and antioxidant defense systems. Gene expression analysis showed that the majority of genes involved in photosynthesis were repressed, but the THF1 gene was induced, suggesting that it may play an important role in the production of vesicles for leaf development under low-temperature conditions. Several genes involved in calcium/calmodulin-mediated signal transduction, ABA homeostasis and transport, and antioxidant defense systems were significantly induced under chilling stress, suggesting that they may act as positive regulators in the enhanced low-temperature tolerance of poplar. Several transcription factors had divergent expression patterns, suggesting they have variable functional responses to abiotic stress. This profile of global gene expression patterns during chilling stress will be valuable for future studies on the molecular mechanisms of chilling tolerance in woody plants.
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