Evidence map›Paper›PMID 23651998›Full record

ArticleNature communications2013

Characterization of salt-adapted secreted lignocellulolytic enzymes from the mangrove fungus Pestalotiopsis sp.

Yonathan Arfi, Didier Chevret, Bernard Henrissat, Jean-Guy Berrin, Anthony Levasseur, Eric Record

Open access · bronzeAbstract read
PubMed Publisher
In one paragraph

Article in Nature communications, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
11.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 113 citations in OpenAlex.

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  7. A New Phenolic Acid Decarboxylase from the Brown-Rot FungusBioengineering (Basel, Switzerland) · 2024
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  14. Review
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  17. Review
  18. Article
  19. Xylanase from Marine Filamentous FungusJournal of applied glycoscience · 2021
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Yonathan ArfiINRA, UMR1163-Biotechnologie des Champignons Filamenteux, ESIL-Polytech, Aix-Marseille University, 13288 Marseille, France. yonathan.arfi@gmail.com
Didier Chevret
Bernard Henrissat
Jean-Guy Berrin
Anthony Levasseur
Eric Record
Aix-Marseille Université · FRArchitecture et Fonction des Macromolécules Biologiques · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Fungi are important for biomass degradation processes in mangrove forests. Given the presence of sea water in these ecosystems, mangrove fungi are adapted to high salinity. Here we isolate Pestalotiopsis sp. NCi6, a halotolerant and lignocellulolytic mangrove fungus of the order Xylariales. We study its lignocellulolytic enzymes and analyse the effects of salinity on its secretomes. De novo transcriptome sequencing and assembly indicate that this fungus possesses of over 400 putative lignocellulolytic enzymes, including a large fraction involved in lignin degradation. Proteomic analyses of the secretomes suggest that the presence of salt modifies lignocellulolytic enzyme composition, with an increase in the secretion of xylanases and cellulases and a decrease in the production of oxidases. As a result, cellulose and hemicellulose hydrolysis is enhanced but lignin breakdown is reduced. This study highlights the adaptation to salt of mangrove fungi and their potential for biotechnological applications.

Indexed as

Salt ToleranceFungal ProteinsGenome, FungalGlycoside HydrolasesLigninMass SpectrometryMolecular Sequence AnnotationOxidoreductasesRhizophoraceaeRNA, MessengerSalinitySequence Analysis, DNASodium ChlorideTranscriptomeXylarialesFungal ProteinsGlycoside HydrolasesLigninlignocelluloseOxidoreductasesRNA, MessengerSodium Chloride

Identifiers

PMID23651998
OpenAlexW2070985606

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.