Evidence map›Paper›PMID 23651464›Full record

ArticleMolecular microbiology2013

Roles of two large serine recombinases in mobilizing the methicillin-resistance cassette SCCmec.

Agnieszka Misiura, Ying Z Pigli, Susan Boyle-Vavra, Robert S Daum, Martin R Boocock, Phoebe A Rice

Open access · bronzeAbstract read
In one paragraph

Article in Molecular microbiology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 53 citations in OpenAlex.

  1. Article
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  5. Microbiology spectrum · 2023
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  7. Review
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  20. Evolutionary Origin of the Staphylococcal Cassette ChromosomeAntimicrobial agents and chemotherapy · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Agnieszka MisiuraDepartment of Biochemistry and Molecular Biology, The University of Chicago, Chicago, IL, USA.
Ying Z Pigli
Susan Boyle-Vavra
Robert S Daum
Martin R Boocock
Phoebe A Rice
University of Chicago · USUniversity of Illinois Chicago · USUniversity of Glasgow · GB

Funding

Systems for studying the mobility of the SCCmec element in MRSAR21AI087559 · NIAID · UNIVERSITY OF CHICAGO · PI RICE, PHOEBE A · 2010 to 2011
$416k
NIAID NIH HHS R21 AI087559
6 · The paper itself

Abstract

Methicillin-resistant Staphylococcus aureus (MRSA) emerged via acquisition of a mobile element, staphylococcal cassette chromosome mec (SCCmec). Integration and excision of SCCmec is mediated by an unusual site-specific recombination system. Most variants of SCCmec encode two recombinases, CcrA and CcrB, that belong to the large serine family. Since CcrA and CcrB are always found together, we sought to address their specific roles. We show here that CcrA and CcrB can carry out both excisive and integrative recombination in Escherichia coli in the absence of any host-specific or SCCmec-encoded cofactors. CcrA and CcrB are promiscuous in their substrate choice: they act on many non-canonical pairs of recombination sites in addition to the canonical ones, which may explain tandem insertions into the SCCmec attachment site. Moreover, CcrB is always required, but CcrA is only required if one of the four half-sites is present. Recombinational activity correlates with DNA binding: CcrA recognizes only that half-site, which overlaps a conserved coding frame on the host chromosome. Therefore, we propose that CcrA serves as a specificity factor that emerged through modular evolution to enable recognition of a bacterial recombination site that is not an inverted repeat.

Indexed as

Methicillin ResistanceMultigene FamilyRecombination, GeneticBinding SitesDNA, BacterialEscherichia coliMethicillin-Resistant Staphylococcus aureusProtein BindingRecombinant ProteinsRecombinasesSubstrate SpecificityDNA, BacterialRecombinant ProteinsRecombinases

Identifiers

PMID23651464
PMCPMC3714108
OpenAlexW1923452604

What OpenQuestion holds

Textmetadata
LicenceTDM
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.