Evidence map›Paper›PMID 23650371›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2013

CaBP1, a neuronal Ca2+ sensor protein, inhibits inositol trisphosphate receptors by clamping intersubunit interactions.

Congmin Li, Masahiro Enomoto, Ana M Rossi, Min-Duk Seo, Taufiq Rahman, Peter B Stathopulos, Colin W Taylor, Mitsuhiko Ikura, James B Ames

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. MRS2 missense variation at Asp216 abrogates inhibitory MgProtein science : a publication of the Protein Society · 2024
    Article
  5. Caldendrin Is a Repressor of PIEZO2 Channels and Touch Sensation in Mice.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2024
    Article
  6. Review
  7. Article
  8. Review
  9. Review
  10. Review
  11. Article
  12. Calcium Sensors in Neuronal Function and Dysfunction.Cold Spring Harbor perspectives in biology · 2019
    Review
  13. Structure and Function of IPCold Spring Harbor perspectives in biology · 2019
    Review
  14. Review
  15. Structure of IPCurrent opinion in structural biology · 2017
    Review
  16. Review
  17. Sense and specificity in neuronal calcium signalling.Biochimica et biophysica acta · 2015
    Review
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Congmin LiDepartment of Chemistry, University of California, Davis, CA 95616, USA.
Masahiro Enomoto
Ana M Rossi
Min-Duk Seo
Taufiq Rahman
Peter B Stathopulos
Colin W Taylor
Mitsuhiko Ikura
James B Ames

Funding

MEMBRANE TARGETING CALCIUM SENSORS IN VISIONR01EY012347 · NEI · UNIVERSITY OF MD BIOTECHNOLOGY INSTITUTE · PI AMES, JAMES B · 1999 to 2023
$6.9M
Structure of DREAM a Calcium Sensor in Pain ControlR01NS045909 · NINDS · UNIVERSITY OF MD BIOTECHNOLOGY INSTITUTE · PI AMES, JAMES B · 2004 to 2007
$836k
ACQUISITION OF 500 MHZ NMR SPECTROMETERS10RR011973 · NCRR · UNIVERSITY OF CALIFORNIA DAVIS · PI LA MAR, GERD N · 1997 to 1997
–
Biotechnology and Biological Sciences Research Council BB/H009736/1CIHRNCRR NIH HHS S10 RR011973NEI NIH HHS EY012347NEI NIH HHS R01 EY012347NINDS NIH HHS NS045909NINDS NIH HHS R01 NS045909Wellcome Trust 085295
6 · The paper itself

Abstract

Calcium-binding protein 1 (CaBP1) is a neuron-specific member of the calmodulin superfamily that regulates several Ca(2+) channels, including inositol 1,4,5-trisphosphate receptors (InsP3Rs). CaBP1 alone does not affect InsP3R activity, but it inhibits InsP3-evoked Ca(2+) release by slowing the rate of InsP3R opening. The inhibition is enhanced by Ca(2+) binding to both the InsP3R and CaBP1. CaBP1 binds via its C lobe to the cytosolic N-terminal region (NT; residues 1-604) of InsP3R1. NMR paramagnetic relaxation enhancement analysis demonstrates that a cluster of hydrophobic residues (V101, L104, and V162) within the C lobe of CaBP1 that are exposed after Ca(2+) binding interact with a complementary cluster of hydrophobic residues (L302, I364, and L393) in the β-domain of the InsP3-binding core. These residues are essential for CaBP1 binding to the NT and for inhibition of InsP3R activity by CaBP1. Docking analyses and paramagnetic relaxation enhancement structural restraints suggest that CaBP1 forms an extended tetrameric turret attached by the tetrameric NT to the cytosolic vestibule of the InsP3R pore. InsP3 activates InsP3Rs by initiating conformational changes that lead to disruption of an intersubunit interaction between a "hot-spot" loop in the suppressor domain (residues 1-223) and the InsP3-binding core β-domain. Targeted cross-linking of residues that contribute to this interface show that InsP3 attenuates cross-linking, whereas CaBP1 promotes it. We conclude that CaBP1 inhibits InsP3R activity by restricting the intersubunit movements that initiate gating.

Indexed as

AnimalsCalcium-Binding ProteinsCell LineHydrophobic and Hydrophilic InteractionsInositol 1,4,5-Trisphosphate ReceptorsIon Channel GatingMolecular Docking SimulationNerve Tissue ProteinsNuclear Magnetic Resonance, BiomolecularProtein BindingProtein Structure, QuaternaryProtein Structure, SecondaryProtein Structure, TertiaryRatsCa2+-binding protein-1Calcium-Binding ProteinsInositol 1,4,5-Trisphosphate ReceptorsNerve Tissue ProteinsEF handintracellular Ca2+ channelion channelryanodine receptor

Identifiers

PMID23650371
PMCPMC3666712

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.