Evidence map›Paper›PMID 23650088›Full record

ArticleEukaryotic cell2013

Trypanosoma brucei Tb927.2.6100 is an essential protein associated with kinetoplast DNA.

Kirsten Beck, Nathalie Acestor, Anjelique Schulfer, Atashi Anupama, Jason Carnes, Aswini K Panigrahi, Ken Stuart

Abstract read
In one paragraph

Article in Eukaryotic cell, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Kirsten BeckSeattle Biomedical Research Institute, Seattle, Washington, USA.
Nathalie Acestor
Anjelique Schulfer
Atashi Anupama
Jason Carnes
Aswini K Panigrahi
Ken Stuart

Funding

MITOCHONDRIAL DNA OF NORMAL AND MUTANT TRYPANOSOMESR01AI014102 · NIAID · SEATTLE CHILDREN'S HOSPITAL · PI KENNETH D STUART · 1985 to 2026
$20.9M
T. brucei Mitochondrial ProteomeR01AI065935 · NIAID · SEATTLE BIOMEDICAL RESEARCH INSTITUTE · PI STUART, KENNETH D · 2005 to 2009
$3.9M
MITOCHONDRIAL DNA OF NORMAL AND MUTANT TRYPANOSOMESR37AI014102 · NIAID · SEATTLE BIOMEDICAL RESEARCH INSTITUTE · PI STUART, KENNETH D · 1992 to 2001
$971k
NIAID NIH HHS AI0174102NIAID NIH HHS AI065935NIAID NIH HHS R01 AI014102NIAID NIH HHS R01 AI065935NIAID NIH HHS R37 AI014102
6 · The paper itself

Abstract

The mitochondrial DNA of trypanosomatid protozoa consists of a complex, intercatenated network of tens of maxicircles and thousands of minicircles. This structure, called kinetoplast DNA (kDNA), requires numerous proteins and multiprotein complexes for replication, segregation, and transcription. In this study, we used a proteomic approach to identify proteins that are associated with the kDNA network. We identified a novel protein encoded by Tb927.2.6100 that was present in a fraction enriched for kDNA and colocalized the protein with kDNA by fluorescence microscopy. RNA interference (RNAi) knockdown of its expression resulted in a growth defect and changes in the proportion of kinetoplasts and nuclei in the cell population. RNAi also resulted in shrinkage and loss of the kinetoplasts, loss of maxicircle and minicircle components of kDNA at similar rates, and (perhaps secondarily) loss of edited and pre-edited mRNA. These results indicate that the Tb927.2.6100 protein is essential for the maintenance of kDNA.

Indexed as

Chromatography, AffinityDNA, KinetoplastDNA, MitochondrialPolymerase Chain ReactionProtein TransportProtozoan ProteinsRNA InterferenceRNA, ProtozoanSubcellular FractionsTrypanosoma brucei bruceiDNA, KinetoplastDNA, MitochondrialProtozoan ProteinsRNA, Protozoan

Identifiers

PMID23650088
PMCPMC3697465

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.