Evidence map›Paper›PMID 23649634›Full record

ArticleJournal of cellular biochemistry2013

HOX antisense lincRNA HOXA-AS2 is an apoptosis repressor in all trans retinoic acid treated NB4 promyelocytic leukemia cells.

Hang Zhao, Xueqing Zhang, Josias Brito Frazão, Antonio Condino-Neto, Peter E Newburger

Open access · greenAbstract read
In one paragraph

Article in Journal of cellular biochemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 64 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
64citing papers in PubMed, 1 pooled it
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

64 citing papers in PubMed, 1 synthesis or guideline pooled it, 96 citations in OpenAlex.

  1. Pooled it
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  7. Review
  8. Article
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  10. Article
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  12. Article
  13. Article
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  15. The Long Non-Coding RNAInternational journal of molecular sciences · 2022
    Article
  16. Article
  17. Tumor immune microenvironment lncRNAs.Briefings in bioinformatics · 2022
    Review
  18. Review
  19. Article
  20. Noncoding RNAs in apoptosis: identification and function.Turkish journal of biology = Turk biyoloji dergisi · 2022
    Review

4 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Hang ZhaoDepartment of Pediatrics, University of Massachusetts Medical School, Worcester, MA 01655, USA.
Xueqing Zhang
Josias Brito Frazão
Antonio Condino-Neto
Peter E Newburger
University of Massachusetts Chan Medical School · USUniversidade de São Paulo · BR

Funding

HOX cluster intergenic non-coding RNAs in myeloid differentiation and functionR01DK054369 · NIDDK · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI NEWBURGER, PETER E, WEISSMAN, SHERMAN MORTON · 1999 to 2013
$7.2M
NIDDK NIH HHS R01 DK054369NIDDK NIH HHS R01DK054369
6 · The paper itself

Abstract

HOXA cluster antisense RNA 2 (HOXA-AS2) is a long non-coding RNA located between the HOXA3 and HOXA4 genes in the HOXA cluster. Its transcript is expressed in NB4 promyelocytic leukemia cells and human peripheral blood neutrophils, and expression is increased in NB4 cells treated with all trans retinoic acid (ATRA). Knockdown of HOXA-AS2 expression by transduced shRNA decreases the number of viable cells and increases the proportion of apoptotic cells, measured by annexin V binding and by activity and cleavage of caspases-3, -8, and -9. The increase in death of HOXA-AS2 knockdown cells was accompanied by an elevated TNF-related apoptosis-inducing ligand (TRAIL) levels, but ATRA-induced NB4 cells treated with TRAIL did show an increase in HOXA-AS2 expression. These results demonstrate that ATRA induction of HOXA-AS2 suppresses ATRA-induced apoptosis, possibly through a TRAIL-mediated pathway. HOXA-AS2-mediated negative regulation thus contributes to the fine-tuning of apoptosis during ATRA-induced myeloid differentiation in NB4 cells.

Indexed as

Annexin A5ApoptosisBlotting, WesternCell LineCell SurvivalGenes, HomeoboxHumansInterferon-gammaNeutrophilsReverse Transcriptase Polymerase Chain ReactionRNA, Long NoncodingTretinoinTumor Necrosis Factor-alphaAnnexin A5Interferon-gammaRNA, Long NoncodingTretinoinTumor Necrosis Factor-alphaAPOPTOSISHox GENE CLUSTERLONG INTERGENIC NON-CODING RNA (lincRNA)MYELOIDNON-CODING RNA

Identifiers

PMID23649634
PMCPMC3999165
OpenAlexW2108461813

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.