Evidence map›Paper›PMID 23648839›Full record

ArticleJournal of molecular biology2013

Three-dimensional structure of CAP-gly domain of mammalian dynactin determined by magic angle spinning NMR spectroscopy: conformational plasticity and interactions with end-binding protein EB1.

Si Yan, Guangjin Hou, Charles D Schwieters, Shubbir Ahmed, John C Williams, Tatyana Polenova

Open access · greenAbstract read
In one paragraph

Article in Journal of molecular biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.0field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Conformational Flexibility of p150Biophysical journal · 2019
    Article
  3. Article
  4. Backbone amideSolid state nuclear magnetic resonance · 2018
    Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Si YanDepartment of Chemistry and Biochemistry, University of Delaware, Newark, DE 19716, USA. Electronic address: syan@udel.edu.
Guangjin Hou
Charles D Schwieters
Shubbir Ahmed
John C Williams
Tatyana Polenova
University of Delaware · USBeckman Research InstituteCity of Hope · USNational Institutes of Health · US

Funding

Transgenic Mouse FacilityP30CA033572 · NCI · CITY OF HOPE/BECKMAN RESEARCH INSTITUTE · PI STANLEY R. HAMILTON · 1985 to 2026
$86.3M
Biomedical ImagingZIACT000090 · CIT · CENTER FOR INFORMATION TECHNOLOGY · PI TRUS, BENES L · 2009 to 2018
$7.8M
COBRE on Membrane Protein Production and CharacterizationP30GM103519 · NIGMS · UNIVERSITY OF DELAWARE · PI LENHOFF, ABRAHAM M · 2012 to 2014
$3.3M
THE ROLE OF MITOCHONDRIAL TRANSPORT PROTEINS IN HEPATOCYTES AND ADIPOCYTESP30RR031160 · NCRR · UNIVERSITY OF DELAWARE · PI LYMAN, EDWARD R · 2010 to 2011
$2.6M
Structure and Dynamics of CAP-GLY: Microtubule Assemblies by Solid-State NMRR01GM085306 · NIGMS · UNIVERSITY OF DELAWARE · PI POLENOVA, TATYANA, WILLIAMS, JOHN CHARLES · 2010 to 2014
$1.4M
Intramural NIH HHSNCI NIH HHS P30 CA033572NCRR NIH HHS 5P30RR031160-03NCRR NIH HHS P30 RR031160NIGMS NIH HHS 8P30GM103519-03NIGMS NIH HHS P30 GM103519NIGMS NIH HHS R01 GM085306NIGMS NIH HHS R01GM085396
6 · The paper itself

Abstract

Microtubules and their associated proteins play important roles in vesicle and organelle transport, cell motility and cell division. Perturbation of these processes by mutation typically gives rise to severe pathological conditions. In our efforts to obtain atomic information on microtubule-associated protein/microtubule interactions with the goal to understand mechanisms that might potentially assist in the development of treatments for these diseases, we have determined the three-dimensional structure of CAP-Gly (cytoskeleton-associated protein, glycine-rich) domain of mammalian dynactin by magic angle spinning NMR spectroscopy. We observe two conformations in the β2 strand encompassing residues T43-V44-A45, residues that are adjacent to the disease-associated mutation, G59S. Upon binding of CAP-Gly to microtubule plus-end tracking protein EB1, the CAP-Gly shifts to a single conformer. We find extensive chemical shift perturbations in several stretches of residues of CAP-Gly upon binding to EB1, from which we define accurately the CAP-Gly/EB1 binding interface. We also observe that the loop regions may exhibit unique flexibility, especially in the GKNDG motif, which participates in the microtubule binding. This study in conjunction with our previous reports suggests that conformational plasticity is an intrinsic property of CAP-Gly likely due to its unusually high loop content and may be required for its biological functions.

Indexed as

Magnetic Resonance SpectroscopyProtein Interaction Domains and MotifsDynactin ComplexHydrogen BondingMicrotubule-Associated ProteinsModels, MolecularMultiprotein ComplexesNeurodegenerative DiseasesProtein BindingProtein ConformationProtein Structure, SecondaryDynactin ComplexMicrotubule-Associated ProteinsMultiprotein Complexes2D3DCAP-Glydistal spinal bulbar muscular atrophydSBMAdynactinend-binding protein EB1magic angle spinningMASNational Institutes of HealthNIHp150(Glued) domainPDBPEGpolyethylene glycolProtein Data Banksolid-state NMRSSNMRthree-dimensionaltwo-dimensionalvan der WaalsVDW

Identifiers

PMID23648839
PMCPMC3812427
OpenAlexW2068159644

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.